PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca59863.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 239aa    MW: 27090.2 Da    PI: 5.1666
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca59863.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.9e-121160148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48
                     +g W+ eEd++l+d +    g+  +W++ ++  g + R++k+c++rw +yl
       Dca59863.1 11 KGVWSVEEDQKLIDFISSNNGDvvNWRSLPHLAGiL-RCGKSCRLRWTNYL 60
                     799*******************************55.************97 PP
2Myb_DNA-binding55.51.3e-1766111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE +  v+++++lG++ W++Ia++++ gRt++++k++w+++l
       Dca59863.1  66 RGPFTPEECKSVVQLHALLGNR-WSAIAARLP-GRTDNDVKNFWNTHL 111
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.082660IPR017930Myb domain
SuperFamilySSF466895.14E-248107IPR009057Homeodomain-like
SMARTSM007175.0E-81062IPR001005SANT/Myb domain
PfamPF002491.8E-111160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-171366IPR009057Homeodomain-like
CDDcd001673.80E-61460No hitNo description
PROSITE profilePS5129424.56261115IPR017930Myb domain
SMARTSM007177.0E-1665113IPR001005SANT/Myb domain
PfamPF002493.0E-1666111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2567114IPR009057Homeodomain-like
CDDcd001677.19E-1268111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVENEDVKVK KGVWSVEEDQ KLIDFISSNN GDVVNWRSLP HLAGILRCGK SCRLRWTNYL  60
RPDINRGPFT PEECKSVVQL HALLGNRWSA IAARLPGRTD NDVKNFWNTH LRKKQHGLIR  120
RFSAPPGSPN TRHTVQWESI WLETEARLSL ESAYYPFGYP VQSFDPFLHL WYSETGASFR  180
EFGRGLGSST SENCSEITGN VDQATEFCAV KDEQMSADDS EENCSDTALD MLLDSPTSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-24111147107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667573.12e-88PREDICTED: transcription factor MYB30-like
SwissprotQ9M2D97e-66MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2R6Q8V95e-68A0A2R6Q8V9_ACTCH; Transcription factor like
STRINGXP_010667573.19e-88(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.13e-68myb domain protein 17