PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca59199.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | NAC | ||||||||
Protein Properties | Length: 194aa MW: 22620.2 Da PI: 4.601 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99 | 6.7e-31 | 6 | 128 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 lppGfrF Ptdeelvv++L+++ +++ +vi+++++y ++PwdL+ k+ e ++ y++s+r +nr+t+ gyWk+ g d++++s+ + Dca59199.1 6 LPPGFRFFPTDEELVVHFLHRRDGILPFRP-DVIPDLELYPYNPWDLEGKALREGSKSYYYSRRV--------QNRVTECGYWKQMGMDEPIMSStsMN 95 79*************************999.99**************96666778899***9984........58*******************97667 PP NAM 98 elvglkktLvfykg..rapkgektdWvmheyrl 128 + vg+kk vf+ g ++ +g t+W+mhey+l Dca59199.1 96 KMVGIKKYYVFHFGepHNTSGDWTNWIMHEYSL 128 77**********5533788899*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-39 | 4 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.23 | 6 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-20 | 7 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MADNNLPPGF RFFPTDEELV VHFLHRRDGI LPFRPDVIPD LELYPYNPWD LEGKALREGS 60 KSYYYSRRVQ NRVTECGYWK QMGMDEPIMS STSMNKMVGI KKYYVFHFGE PHNTSGDWTN 120 WIMHEYSLPE TASSSSRSSS KRRSNSKKDF SRWVICKVYE QGDDDGDGDE EAELSCLDEV 180 FLSMEDLEEI SLPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-30 | 1 | 161 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-30 | 1 | 161 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-30 | 1 | 161 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-30 | 1 | 161 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-30 | 1 | 161 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-30 | 1 | 161 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-30 | 1 | 161 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-30 | 1 | 161 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-30 | 1 | 161 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-30 | 1 | 161 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-30 | 1 | 161 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-30 | 1 | 161 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 5e-30 | 1 | 161 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-30 | 1 | 161 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010687465.1 | 2e-91 | PREDICTED: NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 1e-72 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A1B2RWF3 | 3e-93 | A0A1B2RWF3_9CARY; NAC transcription factor 42 | ||||
STRING | XP_010687465.1 | 7e-91 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-71 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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