PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca5917.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | NAC | ||||||||
Protein Properties | Length: 235aa MW: 27402.6 Da PI: 7.8218 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 127.3 | 1.2e-39 | 14 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkgel 99 lppG+rFhPtdee++ eyL+ kv +l++ +vi+evd ++++Pw+Lp +v e++ yfF k++ k+++ +k+++r+t sgyWka ++k++ + ++++ Dca5917.1 14 LPPGLRFHPTDEEILFEYLRCKVFCLPLPA-SVIPEVDFLNFDPWNLPGNV---EEKRYFFYKKQLKNTRkQKKNQRVTGSGYWKANSSTKQINAPQTHH 109 79****************************.99***************554...44567777777666651556667*****************984433 PP NAM 100 .......vglkktLvfykgrapkgektdWvmheyrl 128 glkk++vfy+g+ pkg++t+W mhey+l Dca5917.1 110 nnlgnftHGLKKSFVFYQGKPPKGHRTHWYMHEYSL 145 4566666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-42 | 10 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.155 | 14 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-21 | 15 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MERQNYVGNS LTKLPPGLRF HPTDEEILFE YLRCKVFCLP LPASVIPEVD FLNFDPWNLP 60 GNVEEKRYFF YKKQLKNTRK QKKNQRVTGS GYWKANSSTK QINAPQTHHN NLGNFTHGLK 120 KSFVFYQGKP PKGHRTHWYM HEYSLHFHQN CEDLNVEDWV ICTVFMKHRT EEVYDSSLLI 180 NEEQCSDNIY SYSMNNVGPS TYDNYCASPT SSSTSVYKVS PYEFNCSGEG NSYSP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-31 | 14 | 172 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-31 | 14 | 172 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-31 | 14 | 172 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-31 | 14 | 172 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-31 | 14 | 172 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-31 | 14 | 172 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-31 | 14 | 172 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-31 | 14 | 172 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-31 | 14 | 172 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-31 | 14 | 172 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-31 | 14 | 172 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-31 | 14 | 172 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-31 | 14 | 172 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-31 | 14 | 172 | 17 | 170 | NAC domain-containing protein 19 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A218L0U9 | 9e-54 | A0A218L0U9_CARPA; NAC4 protein | ||||
STRING | evm.model.supercontig_99.63 | 2e-54 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 9e-49 | NAC domain containing protein 83 |