PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca56998.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 334aa    MW: 37632.7 Da    PI: 4.4373
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca56998.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-19129178255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+G+r+++ +g+W+AeIrdp++    +r++lg+f taeeAa+a++a +++++g
  Dca56998.1 129 QYRGIRRRP-WGKWAAEIRDPRK---GARVWLGTFNTAEEAARAYDAEARRIRG 178
                 69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.95E-34129187No hitNo description
SMARTSM003808.7E-37129192IPR001471AP2/ERF domain
PROSITE profilePS5103224.658129186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-32129188IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23129188IPR016177DNA-binding domain
PRINTSPR003679.5E-12130141IPR001471AP2/ERF domain
PfamPF008473.0E-12130178IPR001471AP2/ERF domain
PRINTSPR003679.5E-12152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MCGGSILSSF KPDVNSRKNA ENFLYGGDLS TKIKGYFKPL KSINDEVCDY DYDYDDDDVK  60
FEADFMEFKD DDIDVDVDDE ELFLVGKSDF ITTVNNSSKI KSFSPSNDLN PVEADAQIGK  120
LPKKKRKNQY RGIRRRPWGK WAAEIRDPRK GARVWLGTFN TAEEAARAYD AEARRIRGKK  180
AKLNFPDEAA PSSANTAKSR SSNAIIDSDT LFDNDYSIAD EKSDTTTAIS EVQNRPKTQE  240
VSSFVSPILE IEENLIAENG KANKRMRLSS ENAVLTEVPC NTDFESHMRM FETSFVDDDW  300
AMEPFLTGCA TQDGLYPVNL WSFDDFPTMS AGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22129186260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-221281881374Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122136KKKRKNQYRGIRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-27ERF family protein