PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Dca55626.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 164aa MW: 18421.6 Da PI: 10.6434 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.4e-20 | 64 | 114 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r+++ +g+W+AeIrdp++ r++lg+f t+eeAa+a+++ ++k++g Dca55626.1 64 TQYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTPEEAARAYDNEARKIRG 114 58********.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.53E-31 | 64 | 123 | No hit | No description |
SMART | SM00380 | 9.2E-40 | 65 | 128 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-33 | 65 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-22 | 65 | 123 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.723 | 65 | 122 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 65 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-12 | 66 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-12 | 88 | 104 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 164 aa Download sequence Send to blast |
MCGGAILANL IPRNQNGVVL GSEFWPCPTN DDSFFSISTS SNKRSLSSSG GVQERKRPKK 60 PRKTQYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNTPEE AARAYDNEAR KIRGKKAKVN 120 FPNEPESHYN SNNNSKFTEN AVGFNAVGAL LYANGLETYR FDHG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-22 | 65 | 124 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 53 | 60 | ERKRPKKP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021862620.1 | 5e-61 | ethylene-responsive transcription factor ERF073-like isoform X1 | ||||
Swissprot | O22259 | 3e-36 | ERF71_ARATH; Ethylene-responsive transcription factor ERF071 | ||||
Swissprot | Q6K7E6 | 1e-34 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A0K9R980 | 1e-59 | A0A0K9R980_SPIOL; Uncharacterized protein | ||||
STRING | XP_010684330.1 | 2e-54 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47520.1 | 8e-36 | ERF family protein |