PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca55168.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB

Protein Properties

Length: 310aa MW: 35497.4 Da PI: 8.1519

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca55168.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.3	3.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l+d++k +G g+W+ +++ g++R++k+c++rw++yl Dca55168.1 14 KGAWTAMEDKILIDYIKAHGEGRWRNLPKRAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.2	1.6e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+el+v+++k+lG++ W++Ia +++ gRt++++k++w++ Dca55168.1 67 RGNITPDEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7999****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.645	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.34E-28	12	108	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.60E-11	16	61	No hit	No description
PROSITE profile	PS51294	25.829	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-24	65	115	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	3.23E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MGRSPCCVKE GLNKGAWTAM EDKILIDYIK AHGEGRWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TPDEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKRVGQEQ 120 HNQAPSDLVT AHSTKKPQID PKKKKARATT TEPKSTSHPM DSNVVRTKAV RCTKVFINPQ 180 PQPRKNNITT NNNNNDDNNI DQQPSSKDST SGDYSCNDHN NSSTKSDDHE HNMTSNILMD 240 DFSKMGDFNL ISELLNSDFS DDFYLSNESN NDYDLTPSSH EHPFVFSQEL LEDWLADHQQ 300 TVDFGFRRTP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-26	12	116	25	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019102913.1	1e-129	PREDICTED: transcription factor MYB23
Swissprot	Q38850	9e-62	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A0J8B896	1e-128	A0A0J8B896_BETVU; Uncharacterized protein
STRING	XP_010666251.1	1e-129	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	3e-63	myb domain protein 3

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]