PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca54626.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

EIL

Protein Properties

Length: 661aa MW: 74371.4 Da PI: 6.2135

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca54626.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	517	8e-158	48	426	1	353
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekv 99 +el++rmw+d+mllkrlke++k+++ +e +++ k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+LraWWk+kv Dca54626.1 48 DELERRMWRDKMLLKRLKEQNKDRC--REG-IDNVKKRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKDKV 143 79*******************99..888.9*************************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----G CS EIN3 100 efdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkp 198 +fdrngpaai+kyqa++l+++ ++++++ s++h+l+elqDTtlgSLLsalmqhcdppqrrfplekg +pPWWP G+e+ww++ g+++dqg+ppykkp Dca54626.1 144 RFDRNGPAAIAKYQADHLVQGMDEDCTA-MGSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGHPPPWWPVGNEEWWPQIGIPNDQGPPPYKKP 241 *********************955.9***************************************************************** PP GG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX CS EIN3 199 hdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ssslrkqspkvtlsceqkedvegkkeskikhv 295 hdlkkawkvsvLtavikhmsp+ie+ir+l+rqsk+lqdkm+akes+++l+++nqee++++++ ++ ++ + ++++s+ +++dv+g + ++v Dca54626.1 242 HDLKKAWKVSVLTAVIKHMSPDIEKIRKLVRQSKCLQDKMTAKESATWLAIINQEESLARKLFPDrcPPPAPGGGGSLVISDTSDYDVDGAGPDSSSDV 340 *************************************************************8766777799***********888888899 PP XXXXXXX.............................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS EIN3 296 qavktta.............................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353 + +k ++ gf++ krk+++s s++v +++v +c++ q++++++ l+f+d+ +++++ Dca54626.1 341 EDCKPQNinvfnfrekfmghpvnmitpaikgevvetGFDFPVKRKQPSSGSQTVIDQKV-FLCENPQCPYNDPCLGFPDRILRHDHQ 426 **999*************************9****99999999988876.**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	1.0E-131	48	297	No hit	No description
Gene3D	G3DSA:1.10.3180.10	7.9E-75	171	307	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	8.37E-61	176	300	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence Send to blast
MSFFENMGYY PNFEFPPQAT VVREEEPVAE VEQEGNDEDY SDDDVDVDEL ERRMWRDKML 60 LKRLKEQNKD RCREGIDNVK KRQSQEQARR KKMSRAQDGI LKYMLKMMEV CKAQGFVYGI 120 IPEKGKPVSG ASDNLRAWWK DKVRFDRNGP AAIAKYQADH LVQGMDEDCT AMGSTPHTLQ 180 ELQDTTLGSL LSALMQHCDP PQRRFPLEKG HPPPWWPVGN EEWWPQIGIP NDQGPPPYKK 240 PHDLKKAWKV SVLTAVIKHM SPDIEKIRKL VRQSKCLQDK MTAKESATWL AIINQEESLA 300 RKLFPDRCPP PAPGGGGSLV ISDTSDYDVD GAGPDSSSDV EDCKPQNINV FNFREKFMGH 360 PVNMITPAIK GEVVETGFDF PVKRKQPSSG SQTVIDQKVF LCENPQCPYN DPCLGFPDRI 420 LRHDHQLNCP FRSRGVEVTN TQNTLEKHPS SESTNFTSSF AQQEKFSLQS AKQSPATFNP 480 CTGTVLETGD QLQQNMQHKT TDGRFVGQGS ALYGNSTYLG QQSQFQIDNV GFFASHGGNG 540 SQGMFVNGKN NNQVKQKPSL QMSNGFNGVF QSRQQMQAPM DGGFRGLSNM SGNIPQGQNI 600 SGSSVFSSGG MQQQQQLDQC RTFDSSFPMH LNDDITDFGF NSPFKIDFEP LLRPDNPIWN 660 I

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence Send to blast

MSFFENMGYY PNFEFPPQAT VVREEEPVAE VEQEGNDEDY SDDDVDVDEL ERRMWRDKML  60
LKRLKEQNKD RCREGIDNVK KRQSQEQARR KKMSRAQDGI LKYMLKMMEV CKAQGFVYGI  120
IPEKGKPVSG ASDNLRAWWK DKVRFDRNGP AAIAKYQADH LVQGMDEDCT AMGSTPHTLQ  180
ELQDTTLGSL LSALMQHCDP PQRRFPLEKG HPPPWWPVGN EEWWPQIGIP NDQGPPPYKK  240
PHDLKKAWKV SVLTAVIKHM SPDIEKIRKL VRQSKCLQDK MTAKESATWL AIINQEESLA  300
RKLFPDRCPP PAPGGGGSLV ISDTSDYDVD GAGPDSSSDV EDCKPQNINV FNFREKFMGH  360
PVNMITPAIK GEVVETGFDF PVKRKQPSSG SQTVIDQKVF LCENPQCPYN DPCLGFPDRI  420
LRHDHQLNCP FRSRGVEVTN TQNTLEKHPS SESTNFTSSF AQQEKFSLQS AKQSPATFNP  480
CTGTVLETGD QLQQNMQHKT TDGRFVGQGS ALYGNSTYLG QQSQFQIDNV GFFASHGGNG  540
SQGMFVNGKN NNQVKQKPSL QMSNGFNGVF QSRQQMQAPM DGGFRGLSNM SGNIPQGQNI  600
SGSSVFSSGG MQQQQQLDQC RTFDSSFPMH LNDDITDFGF NSPFKIDFEP LLRPDNPIWN  660
I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	1e-80	174	306	1	133	Protein ETHYLENE INSENSITIVE 3
4zds_B	1e-80	174	306	1	133	Protein ETHYLENE INSENSITIVE 3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021773408.1	0.0	ETHYLENE INSENSITIVE 3-like 1 protein
Swissprot	Q9SLH0	0.0	EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBL	Q5QCN2	0.0	Q5QCN2_DIACA; Ethylene insensitive 3-like 2
STRING	XP_010694878.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20770.1	0.0	EIL family protein

Publications ? help Back to Top
Iordachescu M,Verlinden S Transcriptional regulation of three EIN3-like genes of carnation (Dianthus caryophyllus L. cv. Improved White Sim) during flower development and upon wounding, pollination, and ethylene exposure. J. Exp. Bot., 2005. 56(418): p. 2011-8 [PMID:15983019] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kim HG, et al. GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling. Plant Physiol., 2013. 163(4): p. 1776-91 [PMID:24170202] Zhang GB,Yi HY,Gong JM The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation. Plant Cell, 2014. 26(10): p. 3984-98 [PMID:25326291] Wang J, et al. Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation. J Integr Plant Biol, 2015. 57(8): p. 708-21 [PMID:25494721] Qing D, et al. Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis. Mol Plant, 2016. 9(1): p. 158-174 [PMID:26476206] Poulios S,Vlachonasios KE Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana. J. Exp. Bot., 2016. 67(3): p. 905-18 [PMID:26596766] Shen X,Li Y,Pan Y,Zhong S Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence. Front Plant Sci, 2016. 7: p. 1571 [PMID:27822221] Abozeid A, et al. Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 253 [PMID:28286514] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944] Harkey AF, et al. Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene. Plant Physiol., 2018. 176(3): p. 2095-2118 [PMID:29259106]