PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca54024.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

G2-like

Protein Properties

Length: 460aa MW: 50768.2 Da PI: 4.9362

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca54024.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.8	2.5e-33	265	319	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fv+ v++LGGse+AtPk +l+lm+v+gLt++hvkSHLQkYR+ Dca54024.1 265 KPRMRWTPELHESFVDSVNKLGGSERATPKGVLRLMNVEGLTIYHVKSHLQKYRT 319 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-31	262	320	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.932	262	322	IPR017930	Myb domain
SuperFamily	SSF46689	3.58E-17	263	319	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.0E-24	265	319	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-8	267	318	IPR001005	SANT/Myb domain
Pfam	PF14379	4.6E-21	351	396	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MKMNMHSAFP IPTTGGNCSS SPMQTPGGKC FTDLKPSLPF SSPLPSLTNP LEDFPSSPDP 60 FVLSSSREMI ASSHIQTNPI VSHIGSSHNE VPYVSGFQTD MHFPSFPSCE RQPQSSQFLS 120 QTSGSVAHYH NTPLDIQTTG FINYQKDDDD NSWSTSQLQD LLDFPVGLPA SNTQVGNNTE 180 VVSSDDHIKR ITWKEFTDED LYVDNLEPNW NEFLADSNVV DQQPKVPQSS SDIVTPKPSV 240 QQQLSLPSRE VSASANSAST AQSNKPRMRW TPELHESFVD SVNKLGGSER ATPKGVLRLM 300 NVEGLTIYHV KSHLQKYRTA RVRPESCEGN SENKSSATEQ VSPVDLKTSI TITEALRMQM 360 EVQKQLHEQL EIQRKLQLQI EEQGKCLLQM LESQNKAEKE KTNPGPSNVD DPSTQASVEQ 420 SHGLKGKQKL AEGSGGSDQQ PEDDGSDPPP VKRARIDELL

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MKMNMHSAFP IPTTGGNCSS SPMQTPGGKC FTDLKPSLPF SSPLPSLTNP LEDFPSSPDP  60
FVLSSSREMI ASSHIQTNPI VSHIGSSHNE VPYVSGFQTD MHFPSFPSCE RQPQSSQFLS  120
QTSGSVAHYH NTPLDIQTTG FINYQKDDDD NSWSTSQLQD LLDFPVGLPA SNTQVGNNTE  180
VVSSDDHIKR ITWKEFTDED LYVDNLEPNW NEFLADSNVV DQQPKVPQSS SDIVTPKPSV  240
QQQLSLPSRE VSASANSAST AQSNKPRMRW TPELHESFVD SVNKLGGSER ATPKGVLRLM  300
NVEGLTIYHV KSHLQKYRTA RVRPESCEGN SENKSSATEQ VSPVDLKTSI TITEALRMQM  360
EVQKQLHEQL EIQRKLQLQI EEQGKCLLQM LESQNKAEKE KTNPGPSNVD DPSTQASVEQ  420
SHGLKGKQKL AEGSGGSDQQ PEDDGSDPPP VKRARIDELL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-30	265	323	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-30	265	323	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-30	265	323	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-30	265	323	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-30	265	323	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-30	265	323	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-30	265	323	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-30	265	323	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021738038.1	0.0	myb family transcription factor PHL13-like
Refseq	XP_021738039.1	0.0	myb family transcription factor PHL13-like
TrEMBL	Q9M620	0.0	Q9M620_MESCR; CDPK substrate protein 1
STRING	XP_010675144.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04450.1	8e-79	G2-like family protein