PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca53965.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | MYB | ||||||||
Protein Properties | Length: 336aa MW: 37475.6 Da PI: 8.38 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 7.8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ++v +++++G+g+W++++ g++R+ k+c++rw +yl Dca53965.1 14 KGPWTPEEDIIFVSYIQEHGPGNWRAVPTNTGLRRCSKSCRLRWANYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.6 | 8.1e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Dca53965.1 67 RGNFNEQEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.614 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.99E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.2 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MGRPPCCDKV GVKKGPWTPE EDIIFVSYIQ EHGPGNWRAV PTNTGLRRCS KSCRLRWANY 60 LRPGIRRGNF NEQEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKVKTIE 120 QGQNGQNTIS QEGYSPNNSS TSTTSSHHNN NNSNNKGQWE RRLQTDIHLA KQALCEALSI 180 DKPDPNLTRP GYASSTENIA RLLENWMVQK PNLGPSSPCG PHPKSPQEST QNSSSSINND 240 HNIQNSNKNK HWNNNNKITT KGEVVEHDES GFVSLFSGLT TGSSKGTASG NTSVVAAEQP 300 LSLLEKWLFE EGVVSHDHVN LLDMSLDDAS VTPQLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-24 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-24 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-24 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-24 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021733843.1 | 1e-135 | myb-related protein 306-like | ||||
Swissprot | Q9SN78 | 1e-108 | MYB94_ARATH; Transcription factor MYB94 | ||||
TrEMBL | A0A2N9J4F3 | 1e-114 | A0A2N9J4F3_FAGSY; Uncharacterized protein | ||||
TrEMBL | M5WUN2 | 1e-114 | M5WUN2_PRUPE; Uncharacterized protein | ||||
STRING | XP_010678525.1 | 1e-124 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 1e-103 | myb domain protein 94 |
Publications ? help Back to Top | |||
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