PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca53956.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 350aa MW: 39356.2 Da PI: 6.6351

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca53956.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.6	8.8e-48	18	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL+ kv ++++++ ++i evd++k+ k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++l Dca53956.1 18 LPPGFRFHPTDEELITHYLALKVVDDDFSA-RAIGEVDLNKWRA-------KMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIIR-GKAL 107 79************************99.89**99752.......23789*********************************9.99 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfykgrapkgek++Wvmheyrle Dca53956.1 108 VGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 137 ****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-57	13	161	IPR003441	NAC domain
PROSITE profile	PS51005	52.311	18	161	IPR003441	NAC domain
Pfam	PF02365	1.4E-28	19	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MENMGMVVGD NEHEVMDLPP GFRFHPTDEE LITHYLALKV VDDDFSARAI GEVDLNKWRA 60 KMGEKEWYFF CVRDRKYPTG LRTNRATEAG YWKATGKDKE IIRGKALVGM KKTLVFYKGR 120 APKGEKSNWV MHEYRLEGKA SLQNLPPNAK NEWVICRVFQ KSAAGKKIPF TGLMRPESIN 180 PEFNPSGNLP PLMESSPHVS CFSNQINNST NTAQTSHYYN TNQPSFDGLI TNNPFNTIPP 240 NSITGYLPRI GSVNPYFQPQ TGPFLGNYVM SDQNILRAIL NNQGTETKQG MKTEVVNYSA 300 SQDTGLSSDM NNAEISSVVS TYDMGRRTID EHDGPSTSDG PIDLENLWSY

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MENMGMVVGD NEHEVMDLPP GFRFHPTDEE LITHYLALKV VDDDFSARAI GEVDLNKWRA  60
KMGEKEWYFF CVRDRKYPTG LRTNRATEAG YWKATGKDKE IIRGKALVGM KKTLVFYKGR  120
APKGEKSNWV MHEYRLEGKA SLQNLPPNAK NEWVICRVFQ KSAAGKKIPF TGLMRPESIN  180
PEFNPSGNLP PLMESSPHVS CFSNQINNST NTAQTSHYYN TNQPSFDGLI TNNPFNTIPP  240
NSITGYLPRI GSVNPYFQPQ TGPFLGNYVM SDQNILRAIL NNQGTETKQG MKTEVVNYSA  300
SQDTGLSSDM NNAEISSVVS TYDMGRRTID EHDGPSTSDG PIDLENLWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-49	16	167	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-49	16	167	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-49	16	167	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-49	16	167	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-49	16	167	18	174	NAC domain-containing protein 19
3swm_B	2e-49	16	167	18	174	NAC domain-containing protein 19
3swm_C	2e-49	16	167	18	174	NAC domain-containing protein 19
3swm_D	2e-49	16	167	18	174	NAC domain-containing protein 19
3swp_A	2e-49	16	167	18	174	NAC domain-containing protein 19
3swp_B	2e-49	16	167	18	174	NAC domain-containing protein 19
3swp_C	2e-49	16	167	18	174	NAC domain-containing protein 19
3swp_D	2e-49	16	167	18	174	NAC domain-containing protein 19
4dul_A	2e-49	16	167	15	171	NAC domain-containing protein 19
4dul_B	2e-49	16	167	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010678483.1	0.0	PREDICTED: NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-123	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2I7ZAS9	1e-174	A0A2I7ZAS9_SESPO; NAC domain protein 6
STRING	XP_010678483.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-123	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]