PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca51966.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 747aa    MW: 82575.9 Da    PI: 5.653
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca51966.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.2e-32302359260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +Dg+nWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ d++++ei+Y++ Hnh+k
  Dca51966.1 302 EDGFNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-DGQITEIIYKNAHNHPK 359
                 7****************************************.***************85 PP
2WRKY102.52.4e-32504562159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver++++ k+v++tYeg+Hnhe
  Dca51966.1 504 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHNLKYVITTYEGKHNHE 562
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-28289360IPR003657WRKY domain
PROSITE profilePS5081123.273296360IPR003657WRKY domain
SuperFamilySSF1182901.12E-25298360IPR003657WRKY domain
SMARTSM007742.7E-36301359IPR003657WRKY domain
PfamPF031066.7E-25302358IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-35489564IPR003657WRKY domain
SuperFamilySSF1182905.75E-28497564IPR003657WRKY domain
PROSITE profilePS5081137.654499564IPR003657WRKY domain
SMARTSM007743.3E-37504563IPR003657WRKY domain
PfamPF031061.3E-24505562IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MEENVEGLNE WKDITFSGFV DKLSNGEGDL GADDHVNNVE NSNFGVEKLS CVNGDEMNCG  60
IKNEGSIAER RARKLGFDAA KISTPRFRTS SPLPSPGGSS SSFVTIPPGL SPHMLLDSPI  120
LLPNSQVDFL RYHVVFLSPT TGTFSNPSFH RDGQMMIPSL PADSNYNCDG GLSSIFRSHS  180
DTTSLASFSD VQNQILVDHV DYQYLSSMQQ HPVDFEYPAQ LAKGASLNNC SASIPPDRNF  240
SGDLSWNSDS STLQPSVTNV LACAQMPVKN ETPTQDDSGT QNSFEEDQKE MYASAGSART  300
TEDGFNWRKY GQKQVKGSEY PRSYYKCTHP NCQVKKKVER SHDGQITEII YKNAHNHPKP  360
QPCRKSPFGS FPSNETSDYY AKTEGCSAWE NAKLDTKIGP NWQIDGFERP SSASVVTEIS  420
DPPSNAEKTP FGVLESTGTP ELSSTLGNYD DDEEDAATPG QLLPVDDDEK EPDSKRRNTE  480
TTLGSRALRA PRVVVQIESD VDILDDGYRW RKYGQKVVKG NPNPRSYYKC TSAGCNVRKH  540
VERASHNLKY VITTYEGKHN HEVPAARNSC HANSGSGNFP TSATNTHPNL PLPRNPHHPK  600
PEPNSQDLPP PFDARMRCNN DFFRSNFYAA PPPFYQMTYP SLPNTAQYNP FGLAGGHHSA  660
YSGGIMRTVT DPPMPPHVGF SHTATSYSNP ERMLSSVQPL YGGQQLEDID VKPIRPKQEQ  720
GDESLYPTDM HKVQNSDSYN MMGDFPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-32302565878Probable WRKY transcription factor 4
2lex_A1e-32302565878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874ERRARKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673935.10.0PREDICTED: WRKY transcription factor SUSIBA2
RefseqXP_019104423.10.0PREDICTED: WRKY transcription factor SUSIBA2
RefseqXP_019104424.10.0PREDICTED: WRKY transcription factor SUSIBA2
RefseqXP_019104425.10.0PREDICTED: WRKY transcription factor SUSIBA2
TrEMBLA0A0K9RQN50.0A0A0K9RQN5_SPIOL; Uncharacterized protein
STRINGXP_010673935.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.15e-89WRKY DNA-binding protein 2