PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca51266.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 283aa    MW: 30866.8 Da    PI: 8.9695
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca51266.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.2e-191358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd ll ++v+++G+++W++I++ ++ gR++k+c++rw + 
       Dca51266.1 13 KGPWSPEEDALLTRLVEKHGPRNWTLISKSIP-GRSGKSCRLRWCNQ 58
                     79******************************.***********985 PP
2Myb_DNA-binding53.84.5e-1767109347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++ eEde +++a+ ++G++ W+tIar+++ gRt++ +k++w++ 
       Dca51266.1  67 PFSLEEDETIIRAHMRFGNK-WATIARMLN-GRTDNAIKNHWNST 109
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.243863IPR017930Myb domain
SuperFamilySSF466895.35E-3210106IPR009057Homeodomain-like
SMARTSM007171.7E-171261IPR001005SANT/Myb domain
PfamPF002492.6E-191358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-261466IPR009057Homeodomain-like
CDDcd001673.50E-171557No hitNo description
SMARTSM007171.7E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129418.85765114IPR017930Myb domain
PfamPF002491.2E-1467109IPR001005SANT/Myb domain
CDDcd001676.72E-1267110No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2267113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGTVMKKDLD RVKGPWSPEE DALLTRLVEK HGPRNWTLIS KSIPGRSGKS CRLRWCNQLS  60
PQVEHRPFSL EEDETIIRAH MRFGNKWATI ARMLNGRTDN AIKNHWNSTL KRKCASMSGA  120
DFNGFEPDLL QSAGGPPLKR SASVPPGSRI PNPGSPSGSD VSEASFGFGR SGVPLIPHPQ  180
PQPQPQPQPV VVDDPPTSLS LSLPGSEGSD QGSGSGSGSG SKQVFEPFSR ELLAVMQDMI  240
RQEVRNYLAD VQQPHEQTSG FCYPSEAAIT SAMVKRMGIS RLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-38121143105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-38121143105C-Myb DNA-Binding Domain
1msf_C1e-38121143105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028080167.11e-105transcription factor MYB44-like
SwissprotO231603e-83MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A218WEA91e-104A0A218WEA9_PUNGR; Uncharacterized protein
STRINGcassava4.1_034350m5e-98(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.17e-77myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]