PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca50836.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 437aa    MW: 48207.8 Da    PI: 5.9326
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca50836.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-151865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++ Ed  lv++v++ G g+W+++ r  g+ R++k+c++rw ++l
       Dca50836.1 18 KGPWSAAEDAVLVEYVTKNGEGNWNAVQRNTGLLRCGKSCRLRWANHL 65
                     79******************************99**********9986 PP
2Myb_DNA-binding53.65e-1771114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++++E+ l++d++ +lG++ W++I+++++ gRt++++k++w++
       Dca50836.1  71 KGAFSPDEERLIIDLHSKLGNK-WARISSHLP-GRTDNEIKNYWNT 114
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.7481365IPR017930Myb domain
SuperFamilySSF466891.54E-2915112IPR009057Homeodomain-like
SMARTSM007179.4E-121767IPR001005SANT/Myb domain
PfamPF002491.1E-121865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-211972IPR009057Homeodomain-like
CDDcd001675.22E-92065No hitNo description
PROSITE profilePS5129426.55666120IPR017930Myb domain
SMARTSM007178.0E-1770118IPR001005SANT/Myb domain
PfamPF002497.4E-1671114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2573120IPR009057Homeodomain-like
CDDcd001672.07E-1273114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MTTSGGGGGG GGGGGMKKGP WSAAEDAVLV EYVTKNGEGN WNAVQRNTGL LRCGKSCRLR  60
WANHLRPNLK KGAFSPDEER LIIDLHSKLG NKWARISSHL PGRTDNEIKN YWNTRVKRRL  120
RQGLPLYPNQ NNSISTQTSK MPPSFPQPTS LPLSFHKNTP NNNNNNNFSL FNPISLPSSL  180
FPLHHTPLFV SPHIQRRDLS TFSSHHVVST SSLPMGGTLQ LSSGGGYGSG FGFGFGFESS  240
QVPMTRCGFE GFNFDSPRNF ELPSNQHDQN QNQTYDHVVV SEVKDNNSDS NVDQTKSGLL  300
DDMLQEAQVK VTGRGVKRER DDCGLDWDDP TSENSFTGIK KDELEGGQQS NSGKEDLSNL  360
LDLIPSLVEV PDWCNDGGSD SPADQSTSNV SIEIHNDDKT KQQPPLSTTV MSTSDYEDNG  420
DDWNNNNYSW DNLPRIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27181207108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120RVKRRLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863376.11e-133transcription factor MYB97-like
TrEMBLA0A0K9R1H81e-131A0A0K9R1H8_SPIOL; Uncharacterized protein
STRINGXP_010666224.11e-132(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.25e-66myb domain protein 101