PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca49884.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | WRKY | ||||||||
Protein Properties | Length: 190aa MW: 22011.9 Da PI: 4.8307 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.1 | 2.8e-31 | 129 | 187 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk++++pr+YY+C++ gC vkk+ver+++d+++v++tYeg+Hnh+ Dca49884.1 129 VDDGYKWRKYGKKMVKNNPNPRNYYKCSTDGCLVKKRVERDRDDTRYVITTYEGTHNHP 187 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.7E-33 | 114 | 188 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-28 | 121 | 188 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.617 | 124 | 189 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-35 | 129 | 188 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-24 | 130 | 187 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MYISMAINPG STTFFGLQQF RLNNMNSHMT NTTTTTTNTS VESSGSDQFV ECSEFEGSEF 60 FSFEQWANEQ EPVGFEQNVQ DYGFAENRLY DVGGNSRDQT EDENNTGDIN GRERKERVAF 120 RMMSETDVVD DGYKWRKYGK KMVKNNPNPR NYYKCSTDGC LVKKRVERDR DDTRYVITTY 180 EGTHNHPSTH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-26 | 119 | 186 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 7e-26 | 119 | 186 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00531 | DAP | Transfer from AT5G26170 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021744383.1 | 9e-69 | probable WRKY transcription factor 50 isoform X1 | ||||
TrEMBL | A0A0K9R690 | 1e-53 | A0A0K9R690_SPIOL; Uncharacterized protein | ||||
STRING | XP_010669354.1 | 4e-57 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 5e-39 | WRKY DNA-binding protein 50 |