PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca47318.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family TALE
Protein Properties Length: 491aa    MW: 55751.4 Da    PI: 6.1217
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca47318.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.16.3e-084064431954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 F +  ++yp+ +e+  LA k gL+ +qV++WF N R +
  Dca47318.1 406 FDNflHPYPKDAEKHLLALKSGLSRSQVSNWFINARVR 443
                 5555589*****************************88 PP
2BELL68.21.6e-22278347272
        BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 +q+l++kk++Llsll+ Vd++Y+++ ++++tvi +F+a+ +l++ ++++s+ l+++S+ +++L+++i++qi
  Dca47318.1 278 KQKLESKKSQLLSLLQVVDDQYNRCLDEIHTVITAFHAASELDP-RLHASFPLQTVSFFYKNLRQRISNQI 347
                 5899****************************************.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.1E-18211345IPR006563POX domain
PfamPF075265.7E-22217344IPR006563POX domain
PROSITE profilePS5007110.965384447IPR001356Homeobox domain
CDDcd000869.09E-10387447No hitNo description
SMARTSM003891.9E-4387451IPR001356Homeobox domain
SuperFamilySSF466891.11E-14389455IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-23390452IPR009057Homeodomain-like
PfamPF059201.1E-14404443IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MESEPNMRFD LYNHMPMFID GPGPSQMLSI REPGSTSHNQ TFYDGLLHRD NLNHHEPCLG  60
GTSFGLDPLS TVLADRNRHN SDMNDSVVPL HEGIASESFR AMYSSSGSYA SPSSVPSYDV  120
LQSRFLMQHM EPAQFSDFRE ANDWVVTGTL RPQNELCLSL GTAGPSFPCH DVIQEQCSDM  180
CVFDEGQSQR QLLGQCDKEL SLGRGSSSKL AQFSQLVSGS RYRPVLQQIL SEVASYSLDS  240
VGPTSYPSIP FCSEKFGTDE RLENDVSIDA PAESSRRKQK LESKKSQLLS LLQVVDDQYN  300
RCLDEIHTVI TAFHAASELD PRLHASFPLQ TVSFFYKNLR QRISNQILEL GMEGETSGES  360
IRSFEKSFIQ KQWALQQLKK KDQQQLWRPQ RGLPERSVSV LRAWMFDNFL HPYPKDAEKH  420
LLALKSGLSR SQVSNWFINA RVRLWKPLVE EMCSELNRRK GNHQNDEGSN VNNNMTSNQL  480
SIYDFNQRFD A
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021749655.11e-162homeobox protein ATH1-like
RefseqXP_021749656.11e-162homeobox protein ATH1-like
RefseqXP_021749657.11e-162homeobox protein ATH1-like
RefseqXP_021749658.11e-162homeobox protein ATH1-like
RefseqXP_021749659.11e-162homeobox protein ATH1-like
SwissprotP487312e-89ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A0J8B6N51e-159A0A0J8B6N5_BETVU; Uncharacterized protein
STRINGXP_010667130.11e-160(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.15e-75homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]