PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca46964.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 272aa    MW: 30893.5 Da    PI: 4.8009
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca46964.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.59e-1567131155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpse......ng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr++  +g+WvAeIr p++      ++     k++r +lg+f  a +Aa+a+++a++ ++g
  Dca46964.1  67 CNYRGVRQRV-SGKWVAEIRRPVSvnfdvdDNsshsrKHRRLWLGTFHNAVDAAQAYDEAARVFYG 131
                 56*******9.7*********666677776447987444*********************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-867127IPR001471AP2/ERF domain
CDDcd000182.13E-2467141No hitNo description
PROSITE profilePS5103220.61368139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-2668141IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-1668141IPR016177DNA-binding domain
SMARTSM003806.0E-2968145IPR001471AP2/ERF domain
PRINTSPR003671.3E-66980IPR001471AP2/ERF domain
PRINTSPR003671.3E-6105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSSETTDNHA NNRNNTNKRS RNTQITVSEI LAKWSNKDRN MENQRQVHWT SKRGCMAGKG  60
GPDNSKCNYR GVRQRVSGKW VAEIRRPVSV NFDVDDNSSH SRKHRRLWLG TFHNAVDAAQ  120
AYDEAARVFY GPFAILNFPD SASEGTDGDY LRLEETNFDN SRRNDDYQSS LLTDAAEDYK  180
TEIKSIDSNQ VKMNKHKLVE SATTASNDVI QDEPNADITE SSAAYFSSTV ISRDDWDDEN  240
IDQVDFDLDL APAFSDFGEE TREIIKNLFQ GL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676822.19e-45PREDICTED: dehydration-responsive element-binding protein 2A
STRINGXP_010676822.13e-44(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.12e-26ERF family protein