PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca46872.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 1449aa    MW: 160369 Da    PI: 7.9809
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca46872.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-0513071329323
                  ET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                  Cp  dCgk+F ++ +L++H r+H
  Dca46872.1 1307 CPvkDCGKTFFSHKYLVQHRRVH 1329
                  9999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.9E-152667IPR003349JmjN domain
PROSITE profilePS5118313.5782768IPR003349JmjN domain
PfamPF023752.2E-132861IPR003349JmjN domain
SMARTSM005581.8E-50205374IPR003347JmjC domain
PROSITE profilePS5118433.308205374IPR003347JmjC domain
SuperFamilySSF511972.33E-25223388No hitNo description
PfamPF023731.0E-37238357IPR003347JmjC domain
Gene3DG3DSA:3.30.160.608.6E-412751304IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551012821304IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.1113051334IPR007087Zinc finger, C2H2
SMARTSM003550.004513051329IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.18E-613051341No hitNo description
Gene3DG3DSA:3.30.160.601.7E-513061334IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013071329IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1449 aa     Download sequence    Send to blast
MGSGEHSSSS SSSSTEVFPW LKTLPVAPEY HPTIQEFQDP ISYIFKIEPE ASKFGICKII  60
PPVPPPSKKS IVSNFNKSIS LLKNSSSSGG GGGAAEFTTR QQQVGFCPRK QRRPVQKSVW  120
RSGESYTFQQ FEAKARNFEK NYIKNNVKSG GSCKKTVLTP MEVETLYWRA NGGRPFSVEY  180
ANDMPGSGFG GVRERKRGAG DVVSNVGESG WNMRGVARSN MSLLRFMKED IPGVTSPMVY  240
VAMMFSWFAW HAEDHDLHSL NYLHFGSPKT WYGVPRDAAF AFEDVIRVHG FGDEINPLVT  300
FATLGEKTTV MSPEVLVNAG VPCCRLVQNA GEFVITFPRA YHSGFSHGFN CGEASNIATP  360
EWLRFAKDAA IRRAAINYPP MVSHYQLLYD LALAIRVPAG TTSEPRSSRL KDKKKGEGEM  420
LVKQMFVEDV MHNNELLYTL GHGSEVVLLP HNSSEKFVWS NLRVGSKYKV KPGLPFSFHS  480
SEDPAKAYDD IMLARDIKQH KAFYSVKAKL NSMSHKTQQS ETESKEDAAA DGLSDRGLFS  540
CVKCGIWTFA CVAIVQPTEK AAQYLMSADC SVFKDWMAGS HAINGDATAS QPESTSGFMK  600
KNAFGGFYDV HIQSADCRVQ STEGSPIIKS DTAKPREESS ALGLLALQYG NTTDSEEDDD  660
ALPSHPAISD NNLSEGGSSD AGRHQDNATS PNSEQGYASG LEKGPTVNSS RSECDDEHSP  720
HRSNSYERSD HGRASSADSE NATHNFSGKF TEEKNFVKSS GGPELVTEPK LPYTGCDEDS  780
SRMHVFCLEH AVEVEKLLQP IGGVHVVLLC HPDYPNVQFE AMKVAEELEV NYVWKDITFT  840
EATKVDEERI QMALQSEEAT PKTGDWSVKL GINLFYSAIL SRSPLYSKQM PYNSVIYDVF  900
GCGSPSKSSP DAKSGQKGYS RQRKIVVAGK WCGKVWMSNQ VHPLLLQSDP PEKEKVLGLC  960
STTAENPRRK PETGNKPQTT SRNRKPTKRK LSVTSRVAKK MKFELNEVAD SDPEDSPNDR  1020
IESAPRRSIR KLKTQRRSIR RSPDSLSDER IEPLSRISIR KPKTQQRLVK SATHHEVESE  1080
DGVSEDSSGH DEPSQVPLRG PRVLKGGRIS VPKLRVQQNV SLDEPSDDSA DDDVSHHHVL  1140
RRCSSKTKAA RKPTRQLKCS DSEGSLSDES REEHTVVGSP EFEPEPTSED ELRGGPSTRL  1200
RKRISKPSAR VLETKEAARS LAKNSRGKKI SVVVRNPPER KGPKMRLPAM KGPKMRLPAK  1260
KAPAVSSDED TENESDDGEG EFKCDIEGCT MSFQSKQALA LHKRNICPVK DCGKTFFSHK  1320
YLVQHRRVHV DDRPLKCPWK GLNASVYLRC MSELVVEDVV LAPSSLNYGE LESDLLTLVI  1380
AVNVSVYLRC TWELVVEDVA LAPSSLNYGY CTLVRHGGNS VTHFVIRSTT FVGDASVCDF  1440
PLVLLKIAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A4e-76133951353Transcription factor jumonji (Jmj) family protein
6ip4_A4e-76133951353Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1983990RKPTKRKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667395.10.0PREDICTED: lysine-specific demethylase REF6 isoform X1
TrEMBLA0A0J8B6950.0A0A0J8B695_BETVU; Uncharacterized protein
STRINGXP_010667395.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6