PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca46670.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family TALE
Protein Properties Length: 603aa    MW: 66238 Da    PI: 7.1848
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca46670.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.4e-093153521954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Dca46670.1 315 FEHflHPYPKDSDKILLAKQTGLTRSQVSNWFINARVR 352
                 554459******************************88 PP
2BELL113.61e-36174245172
        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 er+e+q+kkakL+++l+e ++rY+qy++q+q+vi sFe +ag+gsak Yt+lAlk+iS++FrcLkdai +qi
  Dca46670.1 174 ERHEIQMKKAKLVTMLDEAEQRYRQYNNQMQIVIESFERAAGVGSAKTYTALALKTISKQFRCLKDAIQGQI 245
                 79********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-52101243IPR006563POX domain
PfamPF075265.3E-43108241IPR006563POX domain
PROSITE profilePS5007112.034293356IPR001356Homeobox domain
CDDcd000866.63E-12296357No hitNo description
SMARTSM003892.0E-9296360IPR001356Homeobox domain
SuperFamilySSF466895.56E-17297363IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28299362IPR009057Homeodomain-like
PfamPF059201.3E-17313352IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MNNPNLAPQF DHHHNHHHTS NNNNNNNNNN NNNNNNNILL LNSAAAAAAF TQPPYPGLTA  60
ATTTTLYGYP PEEARDASRA RQGGLSLSLS SQNPGGGGGG GGGPVSVFGS KYLRVAQELL  120
EEVVNVGDTL TTTTNVNRDQ SPKKGKGVFD TPSGGGGDGG GGSDGGGGVI STSERHEIQM  180
KKAKLVTMLD EAEQRYRQYN NQMQIVIESF ERAAGVGSAK TYTALALKTI SKQFRCLKDA  240
IQGQIRAANK SLGEDEGGSG SSAGKIQGSR LKFIDHQIRQ QRALQQLGMI QNHNAWRPQR  300
GLPERSVSVL RAWLFEHFLH PYPKDSDKIL LAKQTGLTRS QVSNWFINAR VRLWKPMIEE  360
MYNEELKDQE QQQINSEDKE NSNEDIDGVS NTVLEHEKMN NSETLIKSVK LDQPNNINNT  420
SSSFMSMPTR PDPHYQQGFT LTGSLEMGAV SSQGSPKRQR NNNNNQMVSS NNGGEILIKF  480
GDEKQEVLRD NHGYHSMNSS GMNFIGGDLG TYPNMGDLGR FETEDFGATT TRFLQGNNNG  540
GISLSLGLPP SCDNHHQQHF NDLSSTTHHH HHHPFMSSPN QNIQFRRGND FAAQLLPDFV  600
ALR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-16302359158Homeobox protein Meis1
4xrs_B7e-16302359158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676226.10.0PREDICTED: BEL1-like homeodomain protein 1 isoform X1
SwissprotQ9SJ561e-115BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A0K9QEZ80.0A0A0K9QEZ8_SPIOL; Uncharacterized protein
STRINGXP_010676226.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.35e-98BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]