PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca44841.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | YABBY | ||||||||
Protein Properties | Length: 242aa MW: 26592.9 Da PI: 9.9782 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 213.5 | 7.1e-66 | 20 | 195 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...lleelkveeenlksnvekeesastsvss 98 + s+q+Cy+ C+ C+t+lavsvP +slfk vtvrCGhC sll ++l +a ++l++ ++++ + +++ +++ + +++ ++t+v++ Dca44841.1 20 HLLPSDQLCYLPCSRCSTVLAVSVPASSLFKAVTVRCGHCGSLLPLSLPALLFPWSAGNQLNNMTHHNhnlFSSNPHTHMGEMNNQAPNYSFSQTNVAA 118 56789**********************************************999999999887665544553333333333333333333322222222 PP YABBY 99 ekl.....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + e+p++p + rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Dca44841.1 119 SYTtpasnRGGPNVELPKPPSTTRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 195 2113332234457899**999******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.1E-63 | 23 | 195 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.84E-8 | 138 | 189 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.0E-4 | 143 | 187 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSSSSGSPNN ISSLDHQHNH LLPSDQLCYL PCSRCSTVLA VSVPASSLFK AVTVRCGHCG 60 SLLPLSLPAL LFPWSAGNQL NNMTHHNHNL FSSNPHTHMG EMNNQAPNYS FSQTNVAASY 120 TTPASNRGGP NVELPKPPST TRPPEKRQRV PSAYNRFIKD EIQRIKAGNP DISHREAFSA 180 AAKNWAHFPH IHFGLMADQA VKRTSNMRPH HPQGVRRGWV DSYGAFISVN TCHFAPFKGH 240 SS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021855930.1 | 5e-90 | axial regulator YABBY 5-like | ||||
Swissprot | A2X7Q3 | 6e-59 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 6e-59 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A0K9QY62 | 1e-88 | A0A0K9QY62_SPIOL; Uncharacterized protein | ||||
STRING | XP_010676177.1 | 6e-85 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 3e-54 | YABBY family protein |
Publications ? help Back to Top | |||
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