PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca44353.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 371aa    MW: 41810.3 Da    PI: 6.4388
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca44353.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.3e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv++v+ +G g+W+ ++++ g+ R++k+c++rw +yl
       Dca44353.1 14 RGLWSPEEDEKLVRYVTSHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding53.36.4e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+T eE++l++ +++  G++ W+ Ia++++ gRt++++k++w+++
       Dca44353.1  67 RGRFTLEEEKLIISLHEVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                      89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-25664IPR009057Homeodomain-like
PROSITE profilePS5129418.069961IPR017930Myb domain
SuperFamilySSF466894.49E-3011108IPR009057Homeodomain-like
SMARTSM007173.5E-121363IPR001005SANT/Myb domain
PfamPF002491.6E-151461IPR001005SANT/Myb domain
CDDcd001673.01E-111761No hitNo description
PROSITE profilePS5129424.92362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2465116IPR009057Homeodomain-like
SMARTSM007171.7E-1666114IPR001005SANT/Myb domain
PfamPF002491.8E-1567111IPR001005SANT/Myb domain
CDDcd001673.46E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLVRYVT SHGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TLEEEKLIIS LHEVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKVRKPP  120
IPISKTQSAM TTSTKPEISS NCPFMIEFGS DGAQDRSTKA SISTTQQCKT TLIPSSCPSF  180
MFDTSTTINP IGPNDNNNTT TTTTTTTTNN NNNNNNNYNF IGLNNGGNNN EVWNSYTPTI  240
DSVLSTSALD STSDNINNNN YMPSLLENIN SMVHTKVQDC ISTNMNLDHQ EDNHFTPLDQ  300
CLPRLSDHNH DNQLVEINGW EMIESQSCSS FVFWDHGEEI TLSNISNMEH QIGPNSSSLG  360
ALFSSFPSPL R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021754232.11e-139transcription factor MYB3-like
RefseqXP_021757452.11e-137uncharacterized protein LOC110722492
TrEMBLA0A498JP531e-104A0A498JP53_MALDO; Uncharacterized protein
STRINGXP_010676421.11e-132(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-77myb domain protein 103