PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca44232.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 265aa    MW: 28850 Da    PI: 6.5292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca44232.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10147194455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Dca44232.1 147 SHSLAERARREKISERMRILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 194
                 8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.11E-17141210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-10141198No hitNo description
Gene3DG3DSA:4.10.280.107.8E-18143211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.726143193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-8147194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDPPTTALMD ETTPYNLSEI WPMTAINGGD PGVGLDLRRG PFDPNLSRFS EPGPIRECSG  60
NDVVHSGGSA APRKRRENTA ADDDSGKGTA MSDSDSKRLK SSGSGDENPN QKADGEVNSG  120
KQKSKAPSDA QKDYIHVRAR RGQATDSHSL AERARREKIS ERMRILQDLV PGCNKVIGKA  180
LVLDEIINYI QSLQRQVEFL SMKLEAVNTR VSPGIEGFPS KDFGQQPFDT SGGVGYCSQP  240
PREYGRGTSP DWLHMQIGGG FERQT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021747794.11e-131transcription factor BHLH089-like isoform X1
SwissprotQ84T082e-77BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A0K9RFZ01e-126A0A0K9RFZ0_SPIOL; Uncharacterized protein
STRINGXP_010683313.11e-126(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-83BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]