PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca44164.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 290aa    MW: 31822.9 Da    PI: 8.5863
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca44164.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027226248223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp C+ +Fs+  +L+ H ++ H
  Dca44164.1 226 VCPQCNLRFSSVTTLVEHVQKvH 248
                 6******************9988 PP
2zf-C2H217.11.5e-05262284223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp+C++ F+++  L++H  + H
  Dca44164.1 262 VCPKCSRGFRDPVALVQHVEKdH 284
                 7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.96E-12750No hitNo description
PROSITE profilePS510397.6121056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.106.4E-111052IPR000058Zinc finger, AN1-type
PfamPF014289.4E-131350IPR000058Zinc finger, AN1-type
SMARTSM001548.7E-51352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.105.6E-990145IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.58E-892141No hitNo description
PROSITE profilePS510397.90198146IPR000058Zinc finger, AN1-type
PfamPF014281.9E-7101139IPR000058Zinc finger, AN1-type
SMARTSM001540.36101142IPR000058Zinc finger, AN1-type
SMARTSM003550.011225248IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280227248IPR007087Zinc finger, C2H2
PROSITE profilePS501578.746261289IPR007087Zinc finger, C2H2
SMARTSM003556.9261284IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGTPALPELG KHCSLSDCRQ IDFLPFSCDR CRQVFCLEHR SYTQHRCPQA DAHGVTVVIC  60
PLCAKGVRLV PDQDPNITWE THVNTSCDPT NYVKATYKRR CPVSGCKETL VFSNTVNCKD  120
CAIDHCLKHR FAPDHKCPGP PHKPHSAWTT LVNAASSGNS NTNTTTRRRQ QQQQQQQQSS  180
SSSAWSRLVN AASSGMAKLT SDFTHLGQPS TPTPTSPAPV SGGKEVCPQC NLRFSSVTTL  240
VEHVQKVHET NINGVRKLSV DVCPKCSRGF RDPVALVQHV EKDHGGTSKP
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666757.11e-135PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-108SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A0J8B7C51e-133A0A0J8B7C5_BETVU; Uncharacterized protein
STRINGXP_010666757.11e-134(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-104C2H2 family protein