PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca43835.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 317aa    MW: 35407.3 Da    PI: 5.8279
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca43835.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19137187155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++y+GVr+++ +g+W+AeIrdps    r  r +lg+f+taeeAa  +++a+ +l+g
  Dca43835.1 137 KKYRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTFDTAEEAAFVYDNAAIQLRG 187
                 59********.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.77E-22138196IPR016177DNA-binding domain
PfamPF008475.1E-12138187IPR001471AP2/ERF domain
SMARTSM003801.5E-38138201IPR001471AP2/ERF domain
PROSITE profilePS5103224.026138195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-30138195IPR001471AP2/ERF domain
PRINTSPR003671.0E-10139150IPR001471AP2/ERF domain
CDDcd000188.80E-32139194No hitNo description
PRINTSPR003671.0E-10161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
METPHIQPQP QPFRQVEVVK IHCSKTTVKT ESNNSVFYPK KVRISFTDAD ATDNSSEEEE  60
NDTKTRQPQR QRRIKRFINE ISIEKPCYRT PPSDTTNASS STTSCTSGND VVSRKRGKCS  120
SVKRVQRGSK TTTTTTKKYR GVRQRPWGKW AAEIRDPSRR VRLWLGTFDT AEEAAFVYDN  180
AAIQLRGPDA LTNFSTPTSA SSAVTVDESD DVALHTAVRS PTSVLRFQPE PEPERETKLG  240
PVKEEVKEEE VGSYVSCFDS LFPSDFFEFD KAVPSVPDLF EHSGLVEGTG FGYSGWSSCD  300
QLPDIGEIFG SDPLLAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21137194159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838632.14e-87ethylene-responsive transcription factor CRF2-like
TrEMBLA0A0K9RK759e-86A0A0K9RK75_SPIOL; Uncharacterized protein
STRINGXP_010676352.19e-77(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-38cytokinin response factor 4