PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca43795.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family CAMTA
Protein Properties Length: 865aa    MW: 95791 Da    PI: 6.1396
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca43795.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-167.22.7e-215443776
        CG-1 37 gsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvg 76
                gsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK +
  Dca43795.1  5 GSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKGN 44
                9*************************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010762.0E-5195IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143725.961197IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-15546IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.0E-5297384IPR013783Immunoglobulin-like fold
SuperFamilySSF812967.62E-15299384IPR014756Immunoglobulin E-set
PfamPF018331.2E-4299378IPR002909IPT domain
PfamPF127961.6E-8456537IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.02E-18457574IPR020683Ankyrin repeat-containing domain
CDDcd002043.82E-14461570No hitNo description
Gene3DG3DSA:1.25.40.207.2E-19461576IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.563461543IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.018511543IPR002110Ankyrin repeat
SMARTSM002480.0022511540IPR002110Ankyrin repeat
SuperFamilySSF525404.78E-8684737IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.16686708IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.785688716IPR000048IQ motif, EF-hand binding site
PfamPF006120.002689707IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0015709731IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.542710734IPR000048IQ motif, EF-hand binding site
PfamPF006124.8E-5713731IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MTFGGSLFLF DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKGNRASIRE VDSALYSSPM  60
SNSLSSSVST SYNGDIESED NNQVISKYPS SLNFPHTEEN FGNRMGTQLS GTKLDFVPLT  120
QNGSGCKDEN HFKSLDLESW EEVFEQCTNS SGGLPSQPVI PSTFHVGNTG DYTETFSQLL  180
DVGLGINSSS GGSLAPYISQ RNNPTDILNA EFPDVSNIPI ASKQPLLGSI KAAEGLQKVD  240
SFSKWMTKEL DGVDDLNLKS SSNLSWQNIE TTADVDDPSI QLENYSMSPS IGQDQLFDIH  300
DFSPSCASLE TKPLVVISGN FLVSPSEVSK YKWSCMFGEV EVPAEVRGNS ILCCYAPAHS  360
AGRVPFYVTC SNRFACSQVR EFEFLVDSQD VNSRNADCAG VNEKQLLLQL EMLLSTKSSG  420
YVDSHNYIKQ QPVVNKIFSL MEDELCMGVE NHLKDKLLSW LLDKLTEDGK GPNILDEKGQ  480
GVLHLAAALG YDWIIPATLA AGVSVNFRDV NGWTALHWAA SFGREKTVAL LVALGAAPGA  540
LTDPSIEYPL SRTAADLASA NGYKGISGFL AEHSLTTHLE TLTMAEQQIE GSLANVIGKA  600
VHTLREKVAT PDDDCDGSDL PLKDSLAAVR NATQAAGCIH QVIRMKSLQR KQIIDHAGDD  660
ESLLTDERVL SLISSRFQKP GHSGQLVNSA AVQIQKKYRG WKKRKEFLII RERVVKIQAH  720
IRGHQVRKRY KTVVWSVGIL EKVILRWRRK GTGLRGFRPD ALKAPIPENK PQEEDDYDYL  780
KKGRKQTEER LQKALVRVKS MVQYPEGRAQ YRRLLTAVEG FQKNQQPAGS SSLSRTEVVP  840
AENEDDMIDV ESLLDDDNFM AIAFE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690491.10.0PREDICTED: calmodulin-binding transcription activator 2 isoform X1
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLA0A0K9QYQ20.0A0A0K9QYQ2_SPIOL; Uncharacterized protein
STRINGXP_010690491.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.10.0ethylene induced calmodulin binding protein