PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Dca4277.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 246aa MW: 28778.6 Da PI: 6.9849 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.5 | 3.1e-10 | 25 | 80 | 37 | 99 |
EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 d+ r W v++ +++ r+ +++GW++F+ +L+ gDf+vF++ +s f ++v+vf++ Dca4277.1 25 FTDDQPLRHWVVTV--TGG--RH-FQDGWQDFCLHYHLQLGDFLVFTH--QSHFVFHVSVFDA 80 33444458999999..444..44.899********************5..478888***9986 PP | |||||||
2 | B3 | 42 | 1.7e-13 | 154 | 231 | 7 | 87 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + + +++l+lpk+f+++ g+k ++ +++ de+ W++kl + + g+ +l+ GWk+F a++ + +v F+l++ Dca4277.1 154 TRASIGRSWLYLPKEFMRSSGLKRRR-CYIKIIDEKEIPWQMKL--SSSTGHAYLGCGWKDFQTAHNFRPQSVVRFQLIKA 231 555667789***********998655.69***************..99999**************************9973 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.11 | 1 | 81 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.8E-10 | 5 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.12 | 8 | 81 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.42E-11 | 21 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.49E-7 | 44 | 79 | No hit | No description |
PROSITE profile | PS50863 | 10.109 | 148 | 242 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.51E-15 | 148 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-13 | 148 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.9E-9 | 150 | 243 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-11 | 153 | 232 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.64E-12 | 160 | 232 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MQAMPVAYVK QLDTEGSLPH SVVLFTDDQP LRHWVVTVTG GRHFQDGWQD FCLHYHLQLG 60 DFLVFTHQSH FVFHVSVFDA VTACLRRFSC SQSEHEHRQE QVQEQVQEQV QVQVQVQVQE 120 QEQVQVQEQE QEQVQVHEQE QEQEQGISCY VTITRASIGR SWLYLPKEFM RSSGLKRRRC 180 YIKIIDEKEI PWQMKLSSST GHAYLGCGWK DFQTAHNFRP QSVVRFQLIK AGRIPVLKCL 240 QVISPK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31610.1 | 4e-16 | B3 family protein |