PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca42244.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 440aa    MW: 47991.9 Da    PI: 5.8747
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca42244.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.1e-2944100259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgynWrKYGqK+vkg+e+ rsYY+C++++C vkk+ver++ d++++++tY g+H+h 
  Dca42244.1  44 DDGYNWRKYGQKNVKGNEYIRSYYKCSYPNCFVKKQVERTH-DGRITDVTYLGNHEHG 100
                 8***************************************9.***************5 PP
2WRKY105.72.4e-33216274159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK+vkg+++prsYYrC++agCpvkk+ver++ dpkvv++tYeg+H+h+
  Dca42244.1 216 VNDGFRWRKYGQKMVKGNPNPRSYYRCSTAGCPVKKHVERASYDPKVVITTYEGQHDHT 274
                 58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-2733102IPR003657WRKY domain
PROSITE profilePS5081123.08938102IPR003657WRKY domain
SuperFamilySSF1182902.22E-2439102IPR003657WRKY domain
SMARTSM007747.4E-3343101IPR003657WRKY domain
PfamPF031066.7E-234499IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-35203276IPR003657WRKY domain
SuperFamilySSF1182908.5E-29208276IPR003657WRKY domain
PROSITE profilePS5081135.129211276IPR003657WRKY domain
SMARTSM007745.2E-38216275IPR003657WRKY domain
PfamPF031063.9E-26217273IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MVTKEENPVT IAMESLPQTF TSIVPTSRAD RELHNAMTPE KPSDDGYNWR KYGQKNVKGN  60
EYIRSYYKCS YPNCFVKKQV ERTHDGRITD VTYLGNHEHG KPHAEHEGSV LSPLSVRAPI  120
PECRQSAVEE DKQSLKQSPT TDDVRPMDGC ETVIIAVPDN TQPLSITPVS QRRDEPNDNL  180
TPKRRKKGVD GADIPVVKPG LESRHVIQTV SEVDIVNDGF RWRKYGQKMV KGNPNPRSYY  240
RCSTAGCPVK KHVERASYDP KVVITTYEGQ HDHTSPPLRT ILPQSPAPPS GGMESNGIGK  300
SKSEESNAAS NPPPKCITYP TDSSSKEKET SEIVDKSDSG KPLSDKDEGR KANNGDNIDQ  360
KTEEIGEKKA AEDNKDDNGG NIDQTGNVAT TVESKSDTMK GEGNVAAAVK VSAESEASSA  420
EQKGTADAAV ASSQAEPVDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-3344277175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666094.11e-143PREDICTED: WRKY transcription factor 1
SwissprotQ93WV09e-68WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0J8B8Q21e-141A0A0J8B8Q2_BETVU; Uncharacterized protein
STRINGXP_010666094.11e-142(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.17e-70WRKY family protein