PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41963.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 501aa    MW: 56311.3 Da    PI: 7.5617
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41963.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.65.2e-14511341099
                 HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 v  s++l +p +f++ + g ++++ + ++  d + + W+v++     +++++l++GW eFv a++Lk+gDf++F+++++s f  +vkv+++
  Dca41963.1  51 VDFSQQLKIPDDFVSVFnGRVPHR-F-IIESDMTKECWRVEV---EEDEGVYLREGWVEFVVAHHLKVGDFLLFEYEEQSIF--LVKVYNR 134
                 666789********8875555444.2.4436688899*****...6667899************************988888..9988765 PP
2B342.21.4e-132293001590
                 -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                 +l++p     + +++++++  +tle+  g  W vkl+   k+gr++lt+GWkeF ++n + +gD++ F+++ ++  
  Dca41963.1 229 QLTVPMAIS-KAKLVHKKG--VTLENAIGDHWPVKLS-HIKDGRVTLTRGWKEFLSDNSVAAGDSLRFEFITDDIL 300
                 466676655.445665554..***************6.5666799************************9876554 PP
3B337.83.4e-123854501886
                 --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
          B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                 +pk  +e  ++   ++ +++l+d++g+ W v++  ++++gr+ l+kGW eF+k + +k gD++ F++++
  Dca41963.1 385 VPKIVTEGQNLM--TKDKVVLRDPDGKCWPVEI-GTRRDGRVALKKGWTEFAKGHAIKNGDSLDFEFKS 450
                 555555544444..3348***************.6888899*************************754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1840137IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.66142135IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-1842139IPR015300DNA-binding pseudobarrel domain
CDDcd100177.20E-1444133No hitNo description
SMARTSM010191.4E-1245135IPR003340B3 DNA binding domain
PfamPF023628.8E-1253134IPR003340B3 DNA binding domain
CDDcd100173.91E-10214306No hitNo description
Gene3DG3DSA:2.40.330.108.5E-16214308IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-7215308IPR003340B3 DNA binding domain
PROSITE profilePS5086313.028215308IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-15217307IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-11228299IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351368462IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-15370460IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-5373462IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-16380460IPR015300DNA-binding pseudobarrel domain
PfamPF023625.5E-10385450IPR003340B3 DNA binding domain
CDDcd100172.74E-9400460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MVSCDPICTY VHPPMVVLMG FVSLVAVAKQ VERTKPPKNS RKASFIKLLG VDFSQQLKIP  60
DDFVSVFNGR VPHRFIIESD MTKECWRVEV EEDEGVYLRE GWVEFVVAHH LKVGDFLLFE  120
YEEQSIFLVK VYNRDGCQKT VVSAQGDKNN PLKINDLEEQ DDSEPFESPT KIRRTDRSCK  180
KQRKRPFTGG KTQQTTPRKN ARVATESLTE HSMSFSVKID KHMSYQFKQL TVPMAISKAK  240
LVHKKGVTLE NAIGDHWPVK LSHIKDGRVT LTRGWKEFLS DNSVAAGDSL RFEFITDDIL  300
KVLVTKASQV ERKSEEPNSP NGATAATPSM DDCEFDEVDV HTAHVILAEA SNTAKKSRKR  360
CSPVLSSSSF TFLWGPTTPA GFLNVPKIVT EGQNLMTKDK VVLRDPDGKC WPVEIGTRRD  420
GRVALKKGWT EFAKGHAIKN GDSLDFEFKS EYLIQVTIHR GKLPDAPKII EDDIIDLCTA  480
NIDNPLTEPA TTMTQPETVV T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.17e-16B3 family protein