PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41449.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 591aa    MW: 65606.7 Da    PI: 6.9338
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41449.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.25.9e-13434480455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+      +K++Ka+ L  A+ YI +Lq
  Dca41449.1 434 NHVEAERQRREKLNQRFYALRAVVPNI-----TKMDKASLLGDAISYITELQ 480
                 799***********************7.....7*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-4849236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.984430479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.48E-15433484No hitNo description
SuperFamilySSF474597.46E-18433491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17434493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10434480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-17436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MGAKSMVLNE EDKAMIASIL GTRAFDYLID RPYSAESSLV SAEISENIQN KLVDLVEKPN  60
TDNFSWNYGF FWQISRSRGG ELVLSWGDGY CREPIDGEES EATRFLKYRV EDEGQQKIRK  120
RVLQKLNGFF GGSDDDNLAL RLDRVTDMEM FFLLSMYFSF PRCEGGPGKC FASGKHVWEA  180
DLLGSELDYC VRSFLAKSAG IQTVVLIPTE FGVVELGSVR KVSENHEMLS ALKCAFAFSN  240
NTTTPTTLPL LTPKVEEDAS TAPGFANLRF VNGVDGFPKI FGQHLSATVR PQFREKLAVR  300
KTEDKSWEPN VNGNKLCFTT QTPRNGLQSP PSWSNISGVK HATSMEVYSP QNSRLQDFAN  360
GIRGDCRSNN NQSQQKKPVQ MQIDFTGATS RAGSADSEHS DPKPAYGTEY GPSDDSKTRK  420
RGRKPANGRE GALNHVEAER QRREKLNQRF YALRAVVPNI TKMDKASLLG DAISYITELQ  480
KKLKDLESNS NGDAQRLSQV PNSDVEVQAA DGEVIVRVRC PLDSHPVAPV MQAFKNEAIQ  540
VLNSKLASDT DTVSHTFVIK SQSSEQLTKD KLLAMFSGES KPLQTRSPTG E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-25428500274Transcription factor MYC2
5gnj_B2e-25428500274Transcription factor MYC2
5gnj_E2e-25428500274Transcription factor MYC2
5gnj_F2e-25428500274Transcription factor MYC2
5gnj_G2e-25428500274Transcription factor MYC2
5gnj_I2e-25428500274Transcription factor MYC2
5gnj_M2e-25428500274Transcription factor MYC2
5gnj_N2e-25428500274Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696336.10.0PREDICTED: transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A167V6C10.0A0A167V6C1_CAMSI; MYC2 trancriptor
STRINGXP_010696336.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-175bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]