PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Dca40919.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 248aa MW: 27384.7 Da PI: 4.8346 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.2 | 1.2e-06 | 3 | 35 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 kC+ +e++e++ C ++ lC +C ++ H Dca40919.1 3 IKCDVCEKNEARVICCADEAALCSKCDTQVHAA 35 58***************************9954 PP | |||||||
2 | zf-B_box | 28.2 | 4e-09 | 54 | 85 | 4 | 35 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 + C+ ++ek + +fC +++ l+C+dC +++H+ Dca40919.1 54 PSCDICQEKTAFIFCVEDRALFCQDCDESIHS 85 78*****************************4 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.67 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.82E-6 | 3 | 35 | No hit | No description |
SMART | SM00336 | 2.6E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.7E-13 | 51 | 98 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.158 | 51 | 94 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.0E-7 | 54 | 94 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.13E-9 | 54 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MKIKCDVCEK NEARVICCAD EAALCSKCDT QVHAANKLAS KHLRLSLLSS SKFPSCDICQ 60 EKTAFIFCVE DRALFCQDCD ESIHSVSTLA AKHQRYLSTG IRVAMNNNNS PSNCGNVSGN 120 NFKAPLNPND AQIPVKQTVQ QQPASPPTSS SWAVDDLLAL PDFGTPDKIQ KDQLELGEFD 180 WWSDVNLFGD QISHEALPAG EVPQLSMSFP SNQTVQYRTT KSSMPNKKPR VEIRQDDDDE 240 YSIVPDLG |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021774921.1 | 1e-120 | B-box zinc finger protein 24-like | ||||
Swissprot | Q9SID1 | 8e-84 | BBX25_ARATH; B-box zinc finger protein 25 | ||||
TrEMBL | A0A0K9R5E7 | 1e-112 | A0A0K9R5E7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010672230.1 | 1e-115 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G06040.1 | 4e-67 | DBB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|