PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca40915.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 152aa    MW: 17460.4 Da    PI: 10.2004
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca40915.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.3e-1766140886
                 -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
          B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                 ++++++ +++lp +fa+e+g++  + +++++ d +grsW ++++   +++r +++ GW +F ka++Lk+gD +v+++++
  Dca40915.1  66 KSYFTKFMMYLPMQFARENGLN--TRVDVMIVDNKGRSWPMEIR-LSCRRRPYIG-GWASFQKAQNLKTGDPIVLEVIE 140
                 67788999*************9..5689***************4.4444557888.*******************9764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-1555140IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.36459152IPR003340B3 DNA binding domain
SMARTSM010197.1E-860152IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-1660140IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-1566140IPR003340B3 DNA binding domain
CDDcd100173.16E-1170150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MFHNANPGFF QPLIPTFESN FSIPKAFNKY LEGEKEGGKK FVTLRGSKQW ETAGSQEQKC  60
CPLVVKSYFT KFMMYLPMQF ARENGLNTRV DVMIVDNKGR SWPMEIRLSC RRRPYIGGWA  120
SFQKAQNLKT GDPIVLEVIE LGPKPILKLH VL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31620.13e-11B3 family protein