PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca4023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | NAC | ||||||||
Protein Properties | Length: 218aa MW: 25001.4 Da PI: 9.4121 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89 | 8.5e-28 | 18 | 188 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.a...................... 77 lppGfrFhPtdeel+v+yLk+++ ++++++ ++i+evdiyk++Pw+Lp k++ +e+ewyfF++++ + g + r Dca4023.1 18 LPPGFRFHPTDEELIVHYLKNQAMSRPCPV-SIIPEVDIYKFDPWQLPDKAEFGENEWYFFTPSRVLNI-GIGRDRgCgrgvtvsalnrlsrtmtrssrk 115 79****************************.89***************99999**********988766.333333135666777777777778888888 PP NAM 78 ........tksgyWkatgkdkevlsk.....kgel..........vglkktLvfykg.rapkgektdWvmheyrl 128 +++++ ++t + ++v s+ + + + +++ + +g pkg+ktdW+mheyrl Dca4023.1 116 vreispylVSAATESETSRPRRVNSAeilnpD--TkrpevpewdpTQSSHVIGLLEGnGPPKGSKTDWIMHEYRL 188 88888887445555677777777665555442..044677777779999999999985689************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-28 | 9 | 82 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.19 | 18 | 215 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-14 | 19 | 188 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.59E-11 | 171 | 215 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MHTSSIIMEG HSSRSSNLPP GFRFHPTDEE LIVHYLKNQA MSRPCPVSII PEVDIYKFDP 60 WQLPDKAEFG ENEWYFFTPS RVLNIGIGRD RGCGRGVTVS ALNRLSRTMT RSSRKVREIS 120 PYLVSAATES ETSRPRRVNS AEILNPDTKR PEVPEWDPTQ SSHVIGLLEG NGPPKGSKTD 180 WIMHEYRLTE AKHQPLKQHG SMRLDDWVLC RIYKKRSM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-39 | 17 | 217 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-39 | 17 | 217 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-39 | 17 | 217 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-39 | 17 | 217 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-38 | 17 | 217 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-38 | 17 | 217 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-38 | 17 | 217 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-38 | 17 | 217 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-38 | 17 | 217 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-38 | 17 | 217 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-38 | 17 | 217 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-38 | 17 | 217 | 19 | 170 | NAC domain-containing protein 19 |
4dul_A | 9e-39 | 17 | 217 | 16 | 167 | NAC domain-containing protein 19 |
4dul_B | 9e-39 | 17 | 217 | 16 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021747028.1 | 2e-68 | NAC transcription factor 29-like | ||||
Swissprot | K4BWV2 | 5e-58 | NAP1_SOLLC; NAC domain-containing protein 1 | ||||
TrEMBL | A0A0K9RTR3 | 1e-65 | A0A0K9RTR3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010683140.1 | 1e-65 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 4e-55 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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