PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca39950.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 404aa    MW: 44988.3 Da    PI: 7.3263
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca39950.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++q+G g+W+++++  g+ R++k+c++rw +yl
       Dca39950.1 14 KGLWSPEEDEKLLRHITQFGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding483e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eEd l+v++++ lG++ W+ Ia+ ++ gRt++++k+ w++
       Dca39950.1  67 RGAFSQEEDNLIVELHAVLGNK-WSQIAAQLP-GRTDNEIKNLWNS 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-27664IPR009057Homeodomain-like
PROSITE profilePS5129417.88961IPR017930Myb domain
SuperFamilySSF466892.57E-2912108IPR009057Homeodomain-like
SMARTSM007171.3E-121363IPR001005SANT/Myb domain
PfamPF002491.0E-141461IPR001005SANT/Myb domain
CDDcd001674.65E-111761No hitNo description
PROSITE profilePS5129426.39862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2665117IPR009057Homeodomain-like
SMARTSM007175.9E-1366114IPR001005SANT/Myb domain
PfamPF002498.1E-1467111IPR001005SANT/Myb domain
CDDcd001674.22E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT QFGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQEEDNLIVE LHAVLGNKWS QIAAQLPGRT DNEIKNLWNS CLKKKLKQRG  120
IDPNTHKPLS EVETEEDQPK SATTTTTKKT ANAATTTTAD QKSFHRVNSN NNSSTALFTL  180
ASSQTPQVNT ISTHEFFPET LFGSFCFQTQ QPSLNYNSIL PTSSTRSGSS SSYIDPNTMM  240
IPFISSAANS SCGFHQQNVE TATTTTTTAT TTSTSHDSTN DHGSFYDSFS WALTDNNTNN  300
NNNNNNNNNN NSNGNNSEEI KWSEYLQTHP LMLTPQNNPT TTNNNSGNYG EIKAESSIMA  360
YTNPTTWHQI ESTTTIPSVT SFNGGSDMYN KDLQRLAEAF GQIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021734572.11e-142transcription factor MYB61-like
TrEMBLA0A0K9RHR61e-124A0A0K9RHR6_SPIOL; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-89myb domain protein 61