PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca39461.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Protein Properties

Length: 273aa MW: 31036.4 Da PI: 10.07

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca39461.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.3	2.7e-13	59	147	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ffkv +p++ +k l++p f+++++g + ++l+d++gr+W kl s + +t+GW++ ++ +Lk+g+fvv++++++s+f +v+++ Dca39461.1 59 FFKVYVPKNCSK--ALRIPHAFIKNFDGR--IPHLVSLTDSTGRVWPAKL--GLLSHELHITEGWQQCTEDLELKSGEFVVLRYVQNSTF--LVTAC 147 778886666655..49*****888766..6668***********..88888899***********************99999..88776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.5E-18	54	150	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.49E-18	54	152	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.41E-8	57	147	No hit	No description
SMART	SM01019	2.1E-9	59	150	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.1E-11	59	147	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.292	72	150	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.16E-6	169	258	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.0E-4	172	254	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MLLILSIKIL KSWERLDFVS GLSHAFELEA KVKGKFQAME VPKVNNNPEF RVPNKHPAFF 60 KVYVPKNCSK ALRIPHAFIK NFDGRIPHLV SLTDSTGRVW PAKLGLLSHE LHITEGWQQC 120 TEDLELKSGE FVVLRYVQNS TFLVTACGID GCQKKEYGVG HPTNLTTPDL KIRFKKVFSG 180 DFKNFVTIPK KVLLKCIFSL DQRVTVRSIE GHFTTSQLRI TSDRFVLGYT GLLKLWERMG 240 VLKGDKLQFE VICENGNKIK EIVVTNLSQC GRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	2e-13	B3 family protein