PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca39415.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WOX
Protein Properties Length: 268aa    MW: 30237.8 Da    PI: 6.5938
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca39415.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.6e-183394257
                T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                ++R+t+t+eq++ L+el++    r p+a++++ + ++l    +++ ++V++WFqN++a+e++
  Dca39415.1 33 STRWTPTTEQITLLKELYYIngVRSPTADQIQAICARLrrygKIEGKNVFYWFQNHKARERQ 94
                58****************95459*************************************97 PP
2Wus_type_Homeobox110.68.4e-363296265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt+eQi++L+ely+ +G+r+P++++iq i a+L++yGkie+kNVfyWFQN+kaRerqk+
         Dca39415.1 32 SSTRWTPTTEQITLLKELYYiNGVRSPTADQIQAICARLRRYGKIEGKNVFYWFQNHKARERQKK 96
                       789****************99******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-111896IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-62094IPR009057Homeodomain-like
PROSITE profilePS500719.6852995IPR001356Homeobox domain
SMARTSM003890.0013199IPR001356Homeobox domain
CDDcd000861.88E-53496No hitNo description
PfamPF000463.1E-153494IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEPHQRQQNS SQIEKISATN STTTSSYLCR QSSTRWTPTT EQITLLKELY YINGVRSPTA  60
DQIQAICARL RRYGKIEGKN VFYWFQNHKA RERQKKRLIS SGNNEGIINC CKQDEVSKCP  120
YIYSSGTNNN PGESFSSSST KENKYRDGSI SGGIFYGTGN VNDATQWTTI GGTNYFSTYA  180
AYNFNGNIST INEDHHEQGQ YYVTASEIET LPLFPMHNED HLHSDYHFPS NGYHTGAYSW  240
SSGGGSNDET SLELSLNSYG YGCYSYTE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680087.18e-83PREDICTED: protein WUSCHEL
TrEMBLK7ZLU21e-94K7ZLU2_SILDI; Protein WUSCHEL-like
STRINGXP_010680087.13e-82(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.18e-41WOX family protein