PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca38878.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 308aa    MW: 34740.5 Da    PI: 7.4934
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca38878.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.2e-072266345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E + + +a + + ++   +W ++a++++ g+t  +++  + 
       Dca38878.1 22 KWTQAENKVFENALAVYDKDtpdRWQKVAAMLP-GKTVGDVIKQYK 66
                     7********************************.****99988775 PP
2Myb_DNA-binding48.22.6e-15130174347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
       Dca38878.1 130 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 174
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.641871IPR017884SANT domain
SMARTSM007177.7E-81971IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-112276IPR009057Homeodomain-like
CDDcd001671.81E-62268No hitNo description
PfamPF002491.9E-52266IPR001005SANT/Myb domain
PROSITE profilePS5129420.955123179IPR017930Myb domain
SuperFamilySSF466895.53E-17125178IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-18126178IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.1E-13127174IPR009057Homeodomain-like
SMARTSM007172.7E-13127177IPR001005SANT/Myb domain
CDDcd001672.99E-11130175No hitNo description
PfamPF002495.5E-13130174IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEVLSSYLSS ASWLIDESRA AKWTQAENKV FENALAVYDK DTPDRWQKVA AMLPGKTVGD  60
VIKQYKELED DVSNIEAGLV PIPGYDTASA FTLEWVNHNG YDDYKHTYIP GGKRGPGARP  120
TDQERKKGVP WTEEEHKLFL MGLKKYGKGD WRNISRNFVV TRTPTQVASH AQKYFIRQLS  180
GGKDKRRASI HDITTVNLEN EALSPETTSN SKRSNSPDHS TITLQTQHQA TSASIPKTHF  240
QWDQTNHNAA IDFESMTGNV FVSQYGNGLY GYKMQGQNLQ RGDIVENYIG NQGMGFQVQQ  300
HTQHYPHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-1723871175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021720733.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-133DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0K9RAW40.0A0A0K9RAW4_SPIOL; Uncharacterized protein
STRINGXP_010685614.11e-168(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-103Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]