PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca38233.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 527aa    MW: 57944.6 Da    PI: 9.397
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca38233.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.5e-1759105148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
       Dca38233.1  59 KGGWTQEEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105
                      688*****************************.************986 PP
2Myb_DNA-binding61.32e-19111157148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde+++++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
       Dca38233.1 111 KGPWSQEEDEKIIELVARYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157
                      79******************************.*************97 PP
3Myb_DNA-binding52.61e-16163206146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE++ l +a++ +G++ W+  a++++ gRt++ +k++w++
       Dca38233.1 163 KDAWTSEEELALMNAHRTYGNK-WAELAKYLP-GRTDNAIKNHWNS 206
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.62354105IPR017930Myb domain
SuperFamilySSF466898.61E-1556112IPR009057Homeodomain-like
SMARTSM007171.7E-1458107IPR001005SANT/Myb domain
PfamPF002493.4E-1559105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1961111IPR009057Homeodomain-like
CDDcd001677.37E-1362105No hitNo description
PROSITE profilePS5129431.889106161IPR017930Myb domain
SuperFamilySSF466893.63E-31108204IPR009057Homeodomain-like
SMARTSM007173.5E-18110159IPR001005SANT/Myb domain
PfamPF002491.0E-18111157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-28112160IPR009057Homeodomain-like
CDDcd001672.67E-16113157No hitNo description
Gene3DG3DSA:1.10.10.603.3E-23161212IPR009057Homeodomain-like
PROSITE profilePS5129421.379162212IPR017930Myb domain
SMARTSM007171.9E-15162210IPR001005SANT/Myb domain
PfamPF002496.5E-15163206IPR001005SANT/Myb domain
CDDcd001678.40E-12165208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MAEGEDYCLE NKQSTAASSS NSEGSASGSA ASFKSSGVSS PVATLSSHRR ITGPIRRAKG  60
GWTQEEDETL RNAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPELV KGPWSQEEDE  120
KIIELVARYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTSEE ELALMNAHRT  180
YGNKWAELAK YLPGRTDNAI KNHWNSSLKK KLDFYLATGK LPPVVKNGHH MNGRDAERST  240
GNGKMVGVLT KDSDSSAQTS SGATDFYRAE DNITKLELFS KIQDLGPSSS NADESADSEV  300
VERSSYVDLT CRSSDSLPLL DNCGNGKSTH GNEGCGTPLQ RKNPTFGSLY YKPPQVESCS  360
PSRSNFDQFS SPAAGKSQIG FFTPPCVKSK SLPEHSPESI LKMAAKTFPN TPSIIRKRRA  420
QFQTPQTQKS GKSDVASCSN RQSCSDNQSG CQNGGTLPTP PSRTPAVNDF FSGKSFNASP  480
PYRLRTNRTA VIKSVEKQLE FTVDKEIEDA KSLGLQFKGK TQVRDDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-70582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-70582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678081.10.0PREDICTED: myb-related protein B
RefseqXP_010678082.10.0PREDICTED: myb-related protein B
SwissprotQ6R0321e-146MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A0K9RHV40.0A0A0K9RHV4_SPIOL; Uncharacterized protein
STRINGXP_010678081.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-138myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]