PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca36263.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GRF
Protein Properties Length: 508aa    MW: 54905.9 Da    PI: 7.0547
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca36263.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.84.6e-24184227144
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 d+epgrCrRtDGKkWRCsr++++ +k+CErH++rgr+rsrk++e
  Dca36263.1 184 DPEPGRCRRTDGKKWRCSRDAVPEQKYCERHINRGRHRSRKPVE 227
                 79***************************************998 PP
2QLQ61.22.9e-21114150137
         QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                 ++FT+aQ+ +L++Q+++yKy+ an+PvP++Ll +i+k
  Dca36263.1 114 GPFTPAQWIELEHQAMIYKYFTANVPVPSNLLIPIKK 150
                 59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-12114150IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.6E-14115148IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.182115150IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.302184228IPR014977WRC domain
PfamPF088791.4E-20185227IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MEFGSLNSDG YTTNGSGQLR SDPFLEEGNR GSKMGKRVEH DLGVRSESKQ QMLSFSSSDK  60
GEEVVGVFAD DGDLRLVSER NGLSFFNQNH DSGNRCGIGL GNGGMHGSLT GIRGPFTPAQ  120
WIELEHQAMI YKYFTANVPV PSNLLIPIKK AIQSAVFPGL SFGSYPSHSY GWGSFHLGFS  180
SSTDPEPGRC RRTDGKKWRC SRDAVPEQKY CERHINRGRH RSRKPVEGHT GQAASGVSTT  240
KAVSSVTPCG GVSSGTATVQ HQIKGLQSAG VAHTSTEPIA ERLNDQQGLS VRTTTVNVDS  300
KDSQYDGSSV SEFGIVSNDA LLNPSQKRTY LDGKNYNSLL DFNIGQNQED QNSLRYFTDN  360
WPKDQSHGSA IPWPKDLKAD WTQLSMSIPV SKDYSLSSSS TNHEKVELDI PQMCLGVGTT  420
VVEGETKRNA WIPIPGRNSM GGPLGEVLLN NTSPEHESLQ KTTFVSLSKS MSGGSPRGEK  480
KMVEGGASLC DDLLGLATHA TCASISSM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021717972.10.0growth-regulating factor 1-like
TrEMBLA0A0K9QFT01e-159A0A0K9QFT0_SPIOL; Uncharacterized protein
STRINGXP_010679671.11e-176(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-88growth-regulating factor 2