PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca3623.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 407aa    MW: 43382 Da    PI: 5.1763
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca3623.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20198247255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Dca3623.1 198 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 247
                7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.3E-33198256IPR001471AP2/ERF domain
PROSITE profilePS5103225.752198255IPR001471AP2/ERF domain
PfamPF008473.5E-14198247IPR001471AP2/ERF domain
CDDcd000184.09E-22198256No hitNo description
SuperFamilySSF541712.29E-22198255IPR016177DNA-binding domain
SMARTSM003805.1E-38198261IPR001471AP2/ERF domain
PRINTSPR003671.1E-11199210IPR001471AP2/ERF domain
PRINTSPR003671.1E-11221237IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MCCSTKVANP TDYTGYPSTA DGGSGGGAGG DGGGAESSST VTTAATVGTN WETSAMVMAL  60
TDVVSGRGGY GFGDPYGGGL YGYPTTAWVG QKRGRDGGGD DGGGGELLEQ MMYYGSYVGG  120
SNSPFDGESS SSVITGVKEE NIQSPIQVQS STIISSSATT SPPSSATYHT PSTTTTTTTT  180
SSTTSTSTFE ETGERKRRYR GVRQRPWGKW AAEIRDPHKA ARVWLGTFDT AEAAARAYDE  240
AALRFRGSRA KLNFPEFVHS LGNAAATTTT SARPPPPLPT TTTTYFPTIS PGIRVPQSIN  300
FQQPQQQQQQ QQQQQLQSQV HNNPDIMGDY LEYSRLLQNT SGDFNFPALE QNLLSSSSSY  360
QQPFSVEQMG VFRQPMDGED QPSNSTSSAN TNTWSQTSHH YRPPPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-24197255160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681129.11e-75PREDICTED: ethylene-responsive transcription factor ABR1
TrEMBLA0A0K9QNR34e-54A0A0K9QNR3_SPIOL; Uncharacterized protein
STRINGXP_010681129.14e-75(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-22ethylene response factor 110