PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca34823.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | G2-like | ||||||||
Protein Properties | Length: 206aa MW: 22393.1 Da PI: 9.6563 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.3 | 1.9e-29 | 36 | 85 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtp+LH++Fv+a+++LGG++kAtPk +l+lm+v gLt++hvkSHLQ Dca34823.1 36 PRLRWTPDLHRCFVHAIDRLGGQHKATPKLVLQLMDVRGLTISHVKSHLQ 85 8************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-27 | 32 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.383 | 32 | 92 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.66E-13 | 34 | 85 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-21 | 36 | 85 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-6 | 37 | 85 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MERSGTSNKS CGNSHSGGGG GGGSGGVRQY VRSKVPRLRW TPDLHRCFVH AIDRLGGQHK 60 ATPKLVLQLM DVRGLTISHV KSHLQGAMAN VQPQKQAHHR YNSESHDTFG RRHKTVSIEV 120 EKELAEKTIM GDKRRSNESE GLSLTLSLQP TLSPLLVGKG SNVSSTNVSE ISEQAISSNS 180 STSTAWDEHV HHPLNLDLSI SLCSME |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-17 | 37 | 85 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-17 | 37 | 85 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-17 | 37 | 85 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-17 | 37 | 85 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-17 | 37 | 85 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-17 | 37 | 85 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-17 | 37 | 85 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-17 | 37 | 85 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016574578.1 | 1e-36 | PREDICTED: putative Myb family transcription factor At1g14600 isoform X1 | ||||
Refseq | XP_016574579.1 | 1e-36 | PREDICTED: putative Myb family transcription factor At1g14600 isoform X2 | ||||
TrEMBL | A0A1U8H0J8 | 3e-35 | A0A1U8H0J8_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A1U8H2E3 | 3e-35 | A0A1U8H2E3_CAPAN; putative Myb family transcription factor At1g14600 isoform X2 | ||||
TrEMBL | A0A2G2ZH63 | 3e-35 | A0A2G2ZH63_CAPAN; putative Myb family transcription factor At1g14600 isoform X1 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 7e-33 | G2-like family protein |