PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca34814.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 282aa    MW: 32271.3 Da    PI: 10.1151
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca34814.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.12.7e-1249135195
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 ffkv +p++ +k   l++p +f+++++g    +  ++l+d++gr W  kl     s +  +t+GW++  ++ +Lk g+fvv++++++s+f  +v+
  Dca34814.1  49 FFKVYVPKNCSK--ALRIPPSFIKNFDGR--IPHLVSLTDSTGRIWPAKL--GFPSHELHITEGWEQCTEDLKLKCGEFVVLRYVQSSTF--LVT 135
                 778886666655..49*******888766..6668***************..77777899************************998887..555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-1743142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-1844142IPR015300DNA-binding pseudobarrel domain
CDDcd100176.97E-1047137No hitNo description
SMARTSM010191.4E-749140IPR003340B3 DNA binding domain
PfamPF023626.5E-1049134IPR003340B3 DNA binding domain
PROSITE profilePS5086310.48962140IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-5179265IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSHTVRPSSK VHLLSSNTVF RDDCCSSVME VPKVNNNPEF RVRNEHPAFF KVYVPKNCSK  60
ALRIPPSFIK NFDGRIPHLV SLTDSTGRIW PAKLGFPSHE LHITEGWEQC TEDLKLKCGE  120
FVVLRYVQSS TFLVTAYGID GCEKKEYGER IQRNRGDRFV GARGGHAVDL TTPNLKIRFQ  180
KIFRAKFKNF VTIPKKVLLK CIFSLDQRIT VTSNEGHWTT SQLRVTHDRF VLGYTGLTKL  240
WERMGVLKGD KLEFEVICVN GNKIKEIVVS NLSQCGQFKR AY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-14B3 family protein