PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca32434.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 1053aa    MW: 116545 Da    PI: 6.9181
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca32434.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.92.1e-14371171399
                 TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ++ lvlp kf e++ gk   +k+++l  +sg sW+v++  + +++  + ++GWk+F+k  +L+e+  +vFk++++ +f   v +f++
  Dca32434.1  37 LHHLVLPSKFSENMLGK--IPKKVSLIGPSGLSWQVEV--SITDNIAIVGEGWKDFAKTFNLEENYLLVFKYTKNLSF--EVLIFDQ 117
                 3459******9777444..6789***************..9999999************************9987777..8888886 PP
2B336.68.2e-126176941699
                 EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  vlp kfa++++gk   +k+l+l  +sg sW+v l  + +++  + ++GWk+F+k  +L+e+  + +k+++  + +l v +f++
  Dca32434.1 617 TVLPSKFAKKMSGK--VPKKLSLIGPSGSSWDVDL--TTTGDIAIVGEGWKDFAKTFNLEENYLLELKYTQ--NLNLEVLIFDQ 694
                 69*********777..4568***************..9999999************************976..67778999886 PP
3B332.31.8e-109381027190
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
          B3    1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sef 90  
                  f+ v+ p +v ++  l++p + ++++  +     + +++l+    ++W   +  ++++g+   +++GWk+F  +n+L++ D++vF+  ++  ++
  Dca32434.1  938 FLVVMRPTSVYTNFYLSIPGDWINKNfpSR---DHHQVILRM-GEKTWMGMFHNNRRRGQiDGFATGWKNFTIENNLEDSDVCVFTPASQkGDA 1027
                  788999*******************96422...333455554.67888887744444444667889********************54332333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.66125118IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-1926118IPR015300DNA-binding pseudobarrel domain
CDDcd100173.59E-1627116No hitNo description
Gene3DG3DSA:2.40.330.102.5E-1727118IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-1328118IPR003340B3 DNA binding domain
PfamPF023621.9E-1136117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-12501601IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-11502595IPR015300DNA-binding pseudobarrel domain
CDDcd100171.41E-11502601No hitNo description
PROSITE profilePS5086310.137503601IPR003340B3 DNA binding domain
PfamPF023622.4E-8503593IPR003340B3 DNA binding domain
SMARTSM010197.6E-6503598IPR003340B3 DNA binding domain
SMARTSM010192.0E-5605695IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-14615694IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-9617694IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-12617695IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.194618695IPR003340B3 DNA binding domain
CDDcd100175.24E-10618693No hitNo description
Gene3DG3DSA:2.40.330.104.7E-149361037IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-129371037IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-139371037No hitNo description
PfamPF023624.7E-99381031IPR003340B3 DNA binding domain
SMARTSM010192.1E-69381039IPR003340B3 DNA binding domain
PROSITE profilePS508639.7989381039IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1053 aa     Download sequence    Send to blast
MEKAESSEEC CKTMEEELYW KHFHAMHFYQ VLPNDFLHHL VLPSKFSENM LGKIPKKVSL  60
IGPSGLSWQV EVSITDNIAI VGEGWKDFAK TFNLEENYLL VFKYTKNLSF EVLIFDQSNS  120
CEKEYCYFVK KASTDIMEDN IDGNASDCVM LKKPKKCSAT DQGKKKVVEA PRETPSSDHD  180
DVDPDFVQKG LPNPNDNVDR KRSADETAST DIIEDNIDSN ASDCVMLKKP KKCSATDQGK  240
KKVVEAPRAT PSSDHDDVDP DFIISEKVRN DAVVAVSSRG SPLRQVYGSL VPKKAKVPDC  300
ASTKKLKNCS VYQRKKKIVK CPITTLAEFD SSGKTRADAI EVVGRSNEAD DIADDTPINM  360
VVAGLRGTKS KGQSAKKSSD NTAASLTLSQ HKAIQQTPTG IGENEMCKKI VLSTGNNNDA  420
LSNALCVEPL NICRSPGTIR SQKVGAKRGR PVRAIPRSGK KLASKHYKQR VSKEYISCRR  480
PVTDEEKRAT VKRATKALSE GSFLVVMRPT GVYRRFFLSF PADWINKNLS SDHFKVILRV  540
GEKTWAGMFH NNKVRGHSAG LASGWKNFAI ENNLEDSDVC VFTPASQKGD GVLILDVKIF  600
RVVPEVTQLT PVLTCPTVLP SKFAKKMSGK VPKKLSLIGP SGSSWDVDLT TTGDIAIVGE  660
GWKDFAKTFN LEENYLLELK YTQNLNLEVL IFDQKNRCEK EYSYFVKKGL PDPNDNVDRE  720
GSVDEAAKTE ILEDDIDGSG SDCVMSKEPE IMCSAPDDDQ GEKNIVEAPI TTLAEFDLSG  780
KTKADGIQVV GSEGRSNEAD ENIVEAPITT LAEFDLSGKT KADAIEIVSS EETSNEADVA  840
DDTLDTQRRI LVVGLVPTNS KGKLAKKPRK KATRSWAQQT PTGNGENKMH DALSAETLNG  900
NDTQRLSKEY MSQRRVVTNE EKEAALKRAT EALTEGSFLV VMRPTSVYTN FYLSIPGDWI  960
NKNFPSRDHH QVILRMGEKT WMGMFHNNRR RGQIDGFATG WKNFTIENNL EDSDVCVFTP  1020
ASQKGDAGLV LDVKIFRVVP EITPLTPLLC AIV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-26B3 family protein