PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca32430.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 130aa    MW: 15129.4 Da    PI: 10.3072
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca32430.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+++++ +G g+W++ ++  g+ R++k+c++rw +yl
       Dca32430.1 14 KGAWTKEEDGRLINYIRNHGEGCWRSLPKAAGLQRCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding569e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++ Edel+++++  lG++ W++Ia++++ gRt++++k++w+++
       Dca32430.1  67 RGNFSEKEDELIINLHSVLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-25564IPR009057Homeodomain-like
PROSITE profilePS5129416.472961IPR017930Myb domain
SuperFamilySSF466892.35E-2913108IPR009057Homeodomain-like
SMARTSM007171.0E-101363IPR001005SANT/Myb domain
PfamPF002494.7E-151461IPR001005SANT/Myb domain
CDDcd001673.08E-81661No hitNo description
PROSITE profilePS5129427.55562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2865116IPR009057Homeodomain-like
SMARTSM007171.8E-1666114IPR001005SANT/Myb domain
PfamPF002493.3E-1667111IPR001005SANT/Myb domain
CDDcd001671.44E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDGRLINYIR NHGEGCWRSL PKAAGLQRCG KSCRLRWINY  60
LRPDLKRGNF SEKEDELIIN LHSVLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLLSRA  120
TKLEKIISEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675151.12e-80PREDICTED: transcription repressor MYB6
SwissprotP813931e-76MYB08_ANTMA; Myb-related protein 308
TrEMBLB9IP371e-77B9IP37_POPTR; Uncharacterized protein
STRINGXP_010675151.16e-80(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.13e-78myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]