PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca32404.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GRF
Protein Properties Length: 277aa    MW: 29977.6 Da    PI: 9.619
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca32404.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.65.9e-2584127144
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e
  Dca32404.1  84 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 127
                 79***************************************998 PP
2QLQ64.13.7e-221450137
         QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                ++FT+aQ+ +L++Q+++yKyL an+PvP++Ll +i+k
  Dca32404.1 14 GPFTPAQWIELEHQAMIYKYLTANVPVPSNLLIPIRK 50
                59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-121450IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.911550IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.2E-161549IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.95484128IPR014977WRC domain
PfamPF088791.4E-2185127IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MNGGMHGSFT GIRGPFTPAQ WIELEHQAMI YKYLTANVPV PSNLLIPIRK AIQSAGFPGF  60
SIASYPSLSY GWGSFHLGFT GNTDPEPGRC RRTDGKKWRC SRDAVPDQKY CERHINRGRH  120
RSRKPVEGHT GQAASGAASP TTAKVVPVMP SAMSSLVSSG GGGGGVPIGI ATAQHHVKGL  180
QPTAGAINAS TDLNTKRLND QQGLSVMSTT MNLESKDSRY SIPKQHISYE ESLISDFGVV  240
SNDSFLNPTQ KSSYLDIKSY NSLSEFNISQ TQDQYPL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:21036927}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021717972.11e-137growth-regulating factor 1-like
SwissprotQ8L8A88e-68GRF2_ARATH; Growth-regulating factor 2
TrEMBLA0A0K9QDT81e-119A0A0K9QDT8_SPIOL; Uncharacterized protein
TrEMBLA0A0K9QFT01e-119A0A0K9QFT0_SPIOL; Uncharacterized protein
STRINGXP_010679671.11e-130(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.16e-68growth-regulating factor 2
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]