PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca31911.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | WRKY | ||||||||
Protein Properties | Length: 187aa MW: 21317.8 Da PI: 6.6985 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.9 | 2.3e-29 | 17 | 77 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqKe+ +s++prsYYrCt++ +Cp+kk+v+r ++dp ++ei Y+g+H+++ Dca31911.1 17 EDGFTWRKYGQKEILNSKYPRSYYRCTHQklyNCPAKKQVQRLDDDPFTFEILYRGDHTCH 77 7****************************999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.9E-28 | 14 | 77 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-26 | 15 | 78 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-38 | 16 | 78 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.52 | 17 | 79 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.7E-27 | 17 | 77 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MVRVGAPQIG NLEMPPEDGF TWRKYGQKEI LNSKYPRSYY RCTHQKLYNC PAKKQVQRLD 60 DDPFTFEILY RGDHTCHLSS TAPTTPQSHA VQPTLFSPPQ HHHHQWPQLS MDFHAPPPED 120 AHTTVFNPHD SSAVVGSGLF LHQHNSLLDL ADVMFNSGSS TCSNNMDVIF SSMVEDNNKW 180 KNNDLKD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 9e-21 | 17 | 76 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146468.1 | 1e-55 | PREDICTED: WRKY transcription factor 55 | ||||
TrEMBL | B9S4B3 | 4e-54 | B9S4B3_RICCO; WRKY transcription factor, putative | ||||
STRING | XP_004146468.1 | 5e-55 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 5e-44 | WRKY DNA-binding protein 55 |