PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca31706.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family TALE
Protein Properties Length: 377aa    MW: 41911.3 Da    PI: 6.8008
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca31706.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-091151521954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yps  ++  LA+++gLt +qV++WF N R +
  Dca31706.1 115 FEHflHPYPSDVDKHILARQTGLTRSQVSNWFINARVR 152
                 664459******************************88 PP
2BELL544.1e-181433072
        BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                +++v +s+e vag+g+a++Yt+lA+ka+SrhFrcL+d ++ qi
  Dca31706.1  1 MKAVEASYESVAGIGTANVYTTLASKAMSRHFRCLRDSLVAQI 43
                89999***********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075266.2E-13139IPR006563POX domain
PROSITE profilePS5007112.11593156IPR001356Homeobox domain
SMARTSM003893.9E-996160IPR001356Homeobox domain
CDDcd000861.36E-1296157No hitNo description
SuperFamilySSF466891.63E-1797163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-2899162IPR009057Homeodomain-like
PfamPF059207.1E-18113152IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MKAVEASYES VAGIGTANVY TTLASKAMSR HFRCLRDSLV AQIKATKKAM GDKDGVASTT  60
LPGTTKGETP RLRILDQTLR QQKAFQQMTL METHPWRPQR GLPERSVSVL RAWLFEHFLH  120
PYPSDVDKHI LARQTGLTRS QVSNWFINAR VRLWKPMVEQ MYLEETKDQQ DKNMGSSSET  180
TDHHQPSTDD HHIGLLQDQK PNPDELARLD PESLSSILNT TTSNPSVTIS TRSLQNDNNA  240
PHHHHLQFGR VEPFGYVALA DFPSSSSYNP NHHTPPYGST TNDNNAPHQG LFGGGASSGN  300
NVSLTLGLQQ HGGNNNHNGV SLAFSPTSQS SLFYDGNDQH IVECQPSHQY SLLDGDQGQN  360
LPYRNLMDAQ LLDDFAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16102160563Homeobox protein Meis2
3k2a_B2e-16102160563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021757542.11e-173homeobox protein BEL1 homolog
TrEMBLA0A0K9RUP41e-160A0A0K9RUP4_SPIOL; Uncharacterized protein
STRINGXP_010676435.11e-159(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.16e-97TALE family protein