PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca31474.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 253aa    MW: 28694.8 Da    PI: 8.7727
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca31474.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.45.9e-1411802697
                T.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3 26 h.ggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                h g +++ +  ++ +++++++W+v+l   k +++++++ +GW++Fv++ng+ +g+f+vF+++g+ +f   v +f
  Dca31474.1 11 HlGREQTPGEAIIKRSSTNQKWKVRL--VKEDREFMFGgQGWNQFVEDNGMSAGEFMVFRYHGKCRF--SVDIF 80
                4333333333455566888*******..888888777659*********************998887..77776 PP
2B342.99e-14159252698
                 ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ++ ++ + + + lp +f+++++ k      + l++ s ++W+vkl     +k++++ y l++G  +Fv++n++  gD++vF+ ++  +++l+v++f 
  Dca31474.1 159 ITDSYAAIATMHLPIEFMNRFMRKGYD--SVDLQT-SENTWNVKLLSyqcSKSRKAyYKLGDGFGKFVHDNNIHGGDVCVFEAVDLPGKTLKVTIFG 252
                 556667778899******999655333..466555.99*******54475444444899***********************887799999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.8E-5183IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52183IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-15482IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-111080IPR003340B3 DNA binding domain
CDDcd100172.02E-81180No hitNo description
SuperFamilySSF1019362.35E-131684IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-14149252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-16150252IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-10153251No hitNo description
PROSITE profilePS508639.671154253IPR003340B3 DNA binding domain
SMARTSM010194.9E-5155253IPR003340B3 DNA binding domain
PfamPF023626.7E-11159251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MQKVCSSFQA HLGREQTPGE AIIKRSSTNQ KWKVRLVKED REFMFGGQGW NQFVEDNGMS  60
AGEFMVFRYH GKCRFSVDIF GIDGTLKAIP AKQHIILFDE NDGDDEADDI AAVSRGQNSM  120
ITPWRKRGRP SEYDKGNKGI LKAKKLMRNL ENPCFMVCIT DSYAAIATMH LPIEFMNRFM  180
RKGYDSVDLQ TSENTWNVKL LSYQCSKSRK AYYKLGDGFG KFVHDNNIHG GDVCVFEAVD  240
LPGKTLKVTI FGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.15e-10B3 family protein