PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca31336.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 269aa    MW: 30441.6 Da    PI: 7.1159
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca31336.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.46.1e-2387147259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgy+WrKYGqK++ ++ +pr+Y+rCt++   +Cp++k+v++ +++p+   i+Y+g+H ++
  Dca31336.1  87 DDGYAWRKYGQKVILKTSHPRNYFRCTHKydkKCPATKQVQQISDNPSKYRIIYHGNHICN 147
                 8***************************99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-2279147IPR003657WRKY domain
PROSITE profilePS5081118.981144IPR003657WRKY domain
SuperFamilySSF1182901.57E-2284148IPR003657WRKY domain
SMARTSM007742.8E-3186148IPR003657WRKY domain
PfamPF031068.2E-2387146IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVALTSCVTS LSLIRGFDTT NLRKRKLEHD HHHPQGESQM LRGEIKHEHL YGEVSNTPTN  60
HTKNKRGCYK RRKSGEGRVE EVTQLRDDGY AWRKYGQKVI LKTSHPRNYF RCTHKYDKKC  120
PATKQVQQIS DNPSKYRIIY HGNHICNYNN NLNQSTIAID NDEHSSAIVL NFNQSSQINP  180
LLFPTSATSA NNTTMKQEYN SPTSDQSTSP AQTAVTGPSW TTLVSEQSDL ISTADNCCST  240
SATECDVDED DYLSSIWTDL EELNGVFAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-2187146968OsWRKY45
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12126LRKRKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-28WRKY DNA-binding protein 70