PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca30054.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 289aa MW: 33126.5 Da PI: 7.5328

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca30054.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	140.8	8.3e-44	11	138	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk.rknratksgyWkatgkdkevlsk..kge 98 pGfrF+Pt+eel+++yLk+ v +kkl++ ++i +diy+++PwdLp ++ +e+ewyf ++rd+k+ +g r++r+t+ g+Wkatg+d++++s ++ Dca30054.1 11 PGFRFKPTEEELISFYLKNIVYDKKLHI-DIIGFLDIYQYDPWDLPGLARIGEREWYFVVPRDRKHFNGCgRPRRTTEYGFWKATGSDRKIVSMsePKR 108 9*************************.99***********8778899*********997449999************99866677 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++g +ktLv+ykgrap+g+ktdW+m+eyrl Dca30054.1 109 VIGFRKTLVYYKGRAPRGSKTDWIMNEYRL 138 8*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	50.672	9	156	IPR003441	NAC domain
SuperFamily	SSF101941	7.45E-51	10	156	IPR003441	NAC domain
Pfam	PF02365	2.1E-22	11	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MDKSVLGFGL PGFRFKPTEE ELISFYLKNI VYDKKLHIDI IGFLDIYQYD PWDLPGLARI 60 GEREWYFVVP RDRKHFNGCG RPRRTTEYGF WKATGSDRKI VSMSEPKRVI GFRKTLVYYK 120 GRAPRGSKTD WIMNEYRLPD NCALHKEAVL CKVYRKATSL RELEERASKE EANEEHTTQQ 180 YPTSPSISFS NCTTSINNGV DHQEDFSPTA FMSTSDHTLT LKREVNEGIV SSNSSNTIQL 240 PFGRDTLGTL EVPKSGFDLI HDPFLSQSCS PWLENLLNFS SPTMAQVVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-41	11	156	17	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021848488.1	1e-121	NAC domain-containing protein 35
Swissprot	Q10S65	6e-85	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A0K9QXX3	1e-120	A0A0K9QXX3_SPIOL; Uncharacterized protein
STRING	XP_010690266.1	1e-117	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	4e-92	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]