PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca29939.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WOX
Protein Properties Length: 168aa    MW: 19485.2 Da    PI: 9.6225
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca29939.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53.1e-20666257
                T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                ++R+++t+eq+ +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Dca29939.1  6 STRWCPTPEQVMILEEMYRGgVRTPNASHIQQITAHLslygKIEGKNVFYWFQNHKARDRQ 66
                58*****************99*************************************996 PP
2Wus_type_Homeobox119.51.5e-38567264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a+tRW+PtpeQ++iLee+y+ G+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk
         Dca29939.1  5 ASTRWCPTPEQVMILEEMYRGGVRTPNASHIQQITAHLSLYGKIEGKNVFYWFQNHKARDRQK 67
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.685267IPR001356Homeobox domain
SMARTSM003891.1E-4471IPR001356Homeobox domain
SuperFamilySSF466892.01E-10767IPR009057Homeodomain-like
PfamPF000467.2E-18766IPR001356Homeobox domain
CDDcd000866.94E-5767No hitNo description
Gene3DG3DSA:1.10.10.602.6E-7866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSPAASTRWC PTPEQVMILE EMYRGGVRTP NASHIQQITA HLSLYGKIEG KNVFYWFQNH  60
KARDRQKLRK RLLGKQQQQQ QLLHHHHHFD HHPILFPIPS VDHHPCQQPP PPPPPPPPFP  120
HRHHHQLPCC PSSSVNVGFH HPPHMFNPPY FSPPHIHHQA DIIVSPNT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021716042.13e-51WUSCHEL-related homeobox 3-like
TrEMBLA0A0K9R2641e-46A0A0K9R264_SPIOL; Uncharacterized protein
STRINGXP_010259966.13e-47(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.16e-38WOX family protein