PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca29903.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bZIP

Protein Properties

Length: 116aa MW: 13205 Da PI: 8.3242

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca29903.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	64.4	2.1e-20	38	101	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea.eNkaLkkeleelkkevaklksev 63 e+elk+++rkq+NRe+ArrsR+RK+ae+eeL++kv+ L + eN+aLk+el +l +e+ kl++e+ Dca29903.1 38 ERELKKQKRKQSNRESARRSRLRKQAECEELQRKVECLNSvENSALKDELRNLADECMKLTAEK 101 89**********************************655*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.8E-16	36	98	No hit	No description
Pfam	PF00170	1.7E-18	38	101	IPR004827	Basic-leucine zipper domain
SMART	SM00338	4.8E-16	38	103	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.921	40	104	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.44E-10	41	98	No hit	No description
CDD	cd14702	4.08E-15	43	95	No hit	No description
PROSITE pattern	PS00036	0	45	60	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MDLWNDNTPG AVNLRPSTGV SSAVIVPSIV MGEICYDERE LKKQKRKQSN RESARRSRLR 60 KQAECEELQR KVECLNSVEN SALKDELRNL ADECMKLTAE KETIQVELKR VGKNDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	60	RRSRLRK
2	54	61	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021718496.1	1e-35	G-box-binding factor 1-like isoform X2
Refseq	XP_027178966.1	1e-35	G-box-binding factor 1
Refseq	XP_027178967.1	1e-35	G-box-binding factor 1
Swissprot	P42774	2e-26	GBF1_ARATH; G-box-binding factor 1
TrEMBL	Q9ARI7	7e-36	Q9ARI7_CATRO; G-box binding factor bZIP transcription factor (Fragment)
STRING	XP_002525106.1	2e-32	(Ricinus communis)
STRING	XP_010070038.1	3e-32	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.2	8e-29	G-box binding factor 1

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]